SMTL ID : 2iwv.1 (3 other biounits)

STRUCTURE OF THE MONOMERIC OUTER MEMBRANE PORIN OMPG IN THE OPEN AND CLOSED CONFORMATION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

9 x CA: CALCIUM ION(Non-covalent)

CA.1: 1 residues within 4Å: Chain A: S.59 No protein-ligand interaction detected (PLIP) CA.4: 6 residues within 4Å: Chain A: N.19, V.20, G.22, D.26, M.27, G.29 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:V.20, A:G.22, A:D.26, A:M.27, H2O.8 CA.5: 4 residues within 4Å: Chain A: V.20, E.21, G.22, G.24 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.21, H2O.8, H2O.102 CA.6: 6 residues within 4Å: Chain A: N.220, D.222, D.226, E.228, E.230 Ligands: CA.7 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.222, A:D.226, A:D.226, A:E.228, A:E.230 CA.7: 4 residues within 4Å: Chain A: D.226, E.230, E.264 Ligands: CA.6 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.226, A:D.226, A:E.230, H2O.84, H2O.98 CA.8: 2 residues within 4Å: Chain A: H.262, G.265 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.262, H2O.100, H2O.101 CA.9: 4 residues within 4Å: Chain A: D.216, R.217, G.231, H.232 No protein-ligand interaction detected (PLIP) CA.10: 1 residues within 4Å: Chain A: D.244 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.244, H2O.77 CA.11: 3 residues within 4Å: Chain A: E.18, Y.51, E.53 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.18

41 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)(Non-functional Binders)

LDA.2: 4 residues within 4Å: Chain A: T.124 Ligands: LDA.29, LDA.38, LDA.48 Ligand excluded by PLIP LDA.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP LDA.12: 5 residues within 4Å: Chain A: R.45, H.75, K.114, D.118, W.132 Ligand excluded by PLIP LDA.13: 9 residues within 4Å: Chain A: E.16, R.169, T.208, Y.210, R.212, R.236, F.240, E.254, Y.272 Ligand excluded by PLIP LDA.14: 9 residues within 4Å: Chain A: L.239, Y.241, L.253, Y.255, F.257, H.271 Ligands: LDA.15, LDA.28, LDA.42 Ligand excluded by PLIP LDA.15: 3 residues within 4Å: Chain A: H.271 Ligands: LDA.14, LDA.41 Ligand excluded by PLIP LDA.16: 5 residues within 4Å: Chain A: I.194, G.214, L.215, D.233 Ligands: LDA.23 Ligand excluded by PLIP LDA.17: 8 residues within 4Å: Chain A: Y.97, T.145, G.146, Y.147, R.151, E.175, F.189, W.221 Ligand excluded by PLIP LDA.18: 3 residues within 4Å: Chain A: W.7, A.39 Ligands: LDA.33 Ligand excluded by PLIP LDA.19: 4 residues within 4Å: Chain A: W.7, N.41, W.44, V.74 Ligand excluded by PLIP LDA.20: 7 residues within 4Å: Chain A: W.44, V.74, Y.76, L.88, T.89, G.90 Ligands: LDA.50 Ligand excluded by PLIP LDA.21: 11 residues within 4Å: Chain A: A.13, M.14, Y.15, P.33, S.34, V.35, Y.50, Q.52, G.276, V.277 Ligands: LDA.45 Ligand excluded by PLIP LDA.22: 7 residues within 4Å: Chain A: F.129, T.156, Y.172, L.174, Q.192 Ligands: LDA.32, LDA.38 Ligand excluded by PLIP LDA.23: 5 residues within 4Å: Chain A: L.215 Ligands: LDA.16, LDA.32, LDA.38, LDA.47 Ligand excluded by PLIP LDA.24: 4 residues within 4Å: Chain A: P.70, F.92, N.109 Ligands: LDA.44 Ligand excluded by PLIP LDA.25: 5 residues within 4Å: Chain A: L.72, V.74, F.92, Q.111, N.140 Ligand excluded by PLIP LDA.26: 5 residues within 4Å: Chain A: N.204, Y.243, F.245, Q.246 Ligands: LDA.36 Ligand excluded by PLIP LDA.27: 4 residues within 4Å: Chain A: F.245, N.247, V.251 Ligands: LDA.36 Ligand excluded by PLIP LDA.28: 4 residues within 4Å: Chain A: L.202, H.205, Y.241 Ligands: LDA.14 Ligand excluded by PLIP LDA.29: 3 residues within 4Å: Chain A: L.123, T.124 Ligands: LDA.2 Ligand excluded by PLIP LDA.30: 4 residues within 4Å: Chain A: L.158, Y.160, L.168 Ligands: LDA.38 Ligand excluded by PLIP LDA.31: 7 residues within 4Å: Chain A: G.91, I.115, M.135, Y.136, K.137, M.180 Ligands: LDA.39 Ligand excluded by PLIP LDA.32: 11 residues within 4Å: Chain A: L.158, V.170, Y.172, Q.192, L.215, D.216 Ligands: LDA.22, LDA.23, LDA.38, LDA.47, LDA.49 Ligand excluded by PLIP LDA.33: 8 residues within 4Å: Chain A: W.7, H.8, F.9, F.37, F.281 Ligands: LDA.18, LDA.35, LDA.37 Ligand excluded by PLIP LDA.34: 7 residues within 4Å: Chain A: A.196, L.198, P.209, Y.210, T.211, W.259 Ligands: LDA.40 Ligand excluded by PLIP LDA.35: 3 residues within 4Å: Chain A: I.11, F.281 Ligands: LDA.33 Ligand excluded by PLIP LDA.36: 6 residues within 4Å: Chain A: Y.243, F.245, L.253 Ligands: LDA.26, LDA.27, LDA.43 Ligand excluded by PLIP LDA.37: 6 residues within 4Å: Chain A: I.11, F.37, L.48 Ligands: LDA.33, LDA.44, LDA.45 Ligand excluded by PLIP LDA.38: 8 residues within 4Å: Chain A: Y.160 Ligands: LDA.2, LDA.22, LDA.23, LDA.30, LDA.32, LDA.47, LDA.49 Ligand excluded by PLIP LDA.39: 2 residues within 4Å: Chain A: W.113 Ligands: LDA.31 Ligand excluded by PLIP LDA.40: 2 residues within 4Å: Chain A: N.235 Ligands: LDA.34 Ligand excluded by PLIP LDA.41: 6 residues within 4Å: Chain A: I.17, D.28, Y.58 Ligands: LDA.15, LDA.42, LDA.43 Ligand excluded by PLIP LDA.42: 11 residues within 4Å: Chain A: Y.15, I.17, L.253, E.254, Y.255, A.273, G.274, V.275 Ligands: LDA.14, LDA.41, LDA.43 Ligand excluded by PLIP LDA.43: 6 residues within 4Å: Chain A: Y.15, Y.58, V.275 Ligands: LDA.36, LDA.41, LDA.42 Ligand excluded by PLIP LDA.44: 5 residues within 4Å: Chain A: Y.50, D.68 Ligands: LDA.24, LDA.37, LDA.45 Ligand excluded by PLIP LDA.45: 7 residues within 4Å: Chain A: V.35, Y.36, L.48, Y.50 Ligands: LDA.21, LDA.37, LDA.44 Ligand excluded by PLIP LDA.46: 6 residues within 4Å: Chain A: I.11, G.12, A.13, V.35, L.249, Y.279 Ligand excluded by PLIP LDA.47: 5 residues within 4Å: Ligands: LDA.23, LDA.32, LDA.38, LDA.48, LDA.49 Ligand excluded by PLIP LDA.48: 3 residues within 4Å: Ligands: LDA.2, LDA.47, LDA.49 Ligand excluded by PLIP LDA.49: 4 residues within 4Å: Ligands: LDA.32, LDA.38, LDA.47, LDA.48 Ligand excluded by PLIP LDA.50: 1 residues within 4Å: Ligands: LDA.20 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yildiz, O. et al., Structure of the Monomeric Outer-Membrane Porin Ompg in the Open and Closed Conformation. Embo J. (2006)

Release Date

2006-08-14

Peptides

OUTER MEMBRANE PROTEIN G: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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OUTER MEMBRANE PROTEIN G

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