SMTL ID : 2ix0.1

RNase II

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

monomer

Ligands

1 x C5P: CYTIDINE-5'-MONOPHOSPHATE(Non-covalent)

C5P.1: 8 residues within 4Å: Chain A: F.101, L.102, F.105, V.106, P.120, D.121, H.122, R.186 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.101 Hydrogen bonds: A:V.106, A:V.106, A:D.121, A:D.121, A:H.122, A:H.122 Water bridges: A:T.103 Salt bridges: A:R.186

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: D.220, D.229 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.220, A:D.229, H2O.3, H2O.3, H2O.3

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: V.119, P.120, D.121, H.122, L.125 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:P.120, A:H.122, A:L.125, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frazao, C. et al., Unravelling the Dynamics of RNA Degradation by Ribonuclease II and its RNA-Bound Complex. Nature (2006)

Release Date

2006-10-05

Peptides

EXORIBONUCLEASE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

EXORIBONUCLEASE 2