- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x HDF: 8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE(Non-covalent)
HDF.2: 12 residues within 4Å:- Chain A: R.9, G.10, V.34, L.35, D.36, N.39, L.40, R.46, F.50, S.96, R.104, L.218
18 PLIP interactions:18 interactions with chain A- Hydrophobic interactions: A:N.39, A:L.40, A:F.50, A:L.218
- Hydrogen bonds: A:V.34, A:D.36, A:N.39, A:R.46, A:R.46, A:S.96, A:S.96, A:R.104, A:R.104
- Water bridges: A:R.9, A:G.10, A:V.34
- pi-Stacking: A:F.50, A:F.50
HDF.8: 12 residues within 4Å:- Chain B: R.9, G.10, V.34, L.35, D.36, N.39, L.40, R.46, F.50, S.96, R.104, L.218
18 PLIP interactions:18 interactions with chain B- Hydrophobic interactions: B:N.39, B:L.40, B:F.50, B:L.218
- Hydrogen bonds: B:V.34, B:D.36, B:N.39, B:R.46, B:R.46, B:S.96, B:S.96, B:R.104, B:R.104
- Water bridges: B:R.9, B:G.10, B:V.34
- pi-Stacking: B:F.50, B:F.50
- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 4 residues within 4Å:- Chain A: T.42, R.46, R.336, H.337
Ligand excluded by PLIPCL.4: 1 residues within 4Å:- Chain A: H.117
Ligand excluded by PLIPCL.5: 1 residues within 4Å:- Chain A: P.148
Ligand excluded by PLIPCL.9: 4 residues within 4Å:- Chain B: T.42, R.46, R.336, H.337
Ligand excluded by PLIPCL.10: 1 residues within 4Å:- Chain B: H.117
Ligand excluded by PLIPCL.11: 1 residues within 4Å:- Chain B: P.148
Ligand excluded by PLIP- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.6: 1 residues within 4Å:- Chain A: R.167
7 PLIP interactions:7 interactions with chain A- Water bridges: A:R.55, A:R.55, A:R.167, A:R.167, A:R.167, A:R.167
- Salt bridges: A:R.167
PO4.12: 1 residues within 4Å:- Chain B: R.167
7 PLIP interactions:7 interactions with chain B- Water bridges: B:R.55, B:R.55, B:R.167, B:R.167, B:R.167, B:R.167
- Salt bridges: B:R.167
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Klar, T. et al., Natural and Non-Natural Antenna Chromophores in the DNA Photolyase from Thermus Thermophilus. Chembiochem (2006)
- Release Date
- 2007-05-01
- Peptides
- DEOXYRIBODIPYRIMIDINE PHOTO-LYASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x HDF: 8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE(Non-covalent)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Klar, T. et al., Natural and Non-Natural Antenna Chromophores in the DNA Photolyase from Thermus Thermophilus. Chembiochem (2006)
- Release Date
- 2007-05-01
- Peptides
- DEOXYRIBODIPYRIMIDINE PHOTO-LYASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A