SMTL ID : 2j2z.1

X-Ray Structure of the Chaperone PapD in complex with the Pilus terminator subunit PapH at 2.3 Angstrom resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-2-2-mer

Ligands

22 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: N.39, E.40, L.85, F.86 Ligand excluded by PLIP SO4.2: 2 residues within 4Å: Chain A: K.44, R.91 Ligand excluded by PLIP SO4.3: 3 residues within 4Å: Chain A: E.40, R.82, S.174 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: I.206, V.214, K.215, K.216 Ligand excluded by PLIP SO4.5: 2 residues within 4Å: Chain A: R.82, R.176 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain A: P.79, Q.80, D.81 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain B: F.61, S.62, R.149 Ligand excluded by PLIP SO4.9: 5 residues within 4Å: Chain B: Q.58, R.152, K.155, K.156, L.157 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain B: A.26, F.27 Chain C: G.199, R.200 Ligand excluded by PLIP SO4.11: 4 residues within 4Å: Chain B: R.71, R.73, N.74, E.142 Ligand excluded by PLIP SO4.12: 7 residues within 4Å: Chain B: F.85, D.120, V.121, L.137, L.144, D.145, Y.146 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain C: N.39, E.40, L.85, F.86 Ligand excluded by PLIP SO4.14: 2 residues within 4Å: Chain C: K.44, R.91 Ligand excluded by PLIP SO4.15: 3 residues within 4Å: Chain C: E.40, R.82, S.174 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain C: I.206, V.214, K.215, K.216 Ligand excluded by PLIP SO4.17: 2 residues within 4Å: Chain C: R.82, R.176 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain C: P.79, Q.80, D.81 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain D: F.61, S.62, R.149 Ligand excluded by PLIP SO4.21: 5 residues within 4Å: Chain D: Q.58, R.152, K.155, K.156, L.157 Ligand excluded by PLIP SO4.22: 4 residues within 4Å: Chain A: G.199, R.200 Chain D: A.26, F.27 Ligand excluded by PLIP SO4.23: 4 residues within 4Å: Chain D: R.71, R.73, N.74, E.142 Ligand excluded by PLIP SO4.24: 7 residues within 4Å: Chain D: F.85, D.120, V.121, L.137, L.144, D.145, Y.146 Ligand excluded by PLIP

2 x CO: COBALT (II) ION(Non-covalent)

CO.7: 3 residues within 4Å: Chain B: H.28 Chain D: H.28 Ligands: CO.19 4 PLIP interactions: 1 interactions with chain D, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: D:H.28, B:H.28, H2O.11, H2O.21 CO.19: 3 residues within 4Å: Chain B: H.28 Chain D: H.28 Ligands: CO.7 4 PLIP interactions: 1 interactions with chain D, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: D:H.28, B:H.28, H2O.11, H2O.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Verger, D. et al., Molecular Mechanism of P Pilus Termination in Uropathogenic Escherichia Coli. Embo Rep. (2006)

Release Date

2006-11-08

Peptides

CHAPERONE PROTEIN PAPD: AC
PAP FIMBRIAL MINOR PILIN PROTEIN: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

CHAPERONE PROTEIN PAPD

PAP FIMBRIAL MINOR PILIN PROTEIN

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