SMTL ID : 2j4g.1 (1 other biounit)

Bacteroides thetaiotaomicron GH84 O-GlcNAcase in complex with n-butyl- thiazoline inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x NB1: (3AR,5R,6S,7R,7AR)-5-(HYDROXYMETHYL)-2-PROPYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D][1,3]THIAZOLE-6,7-DIOL(Non-covalent)

NB1.1: 16 residues within 4Å: Chain A: G.134, F.135, Y.136, K.165, D.241, D.242, C.277, Y.281, T.309, V.313, W.336, N.338, V.341, D.343, Y.344, N.371 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:D.241, A:Y.281, A:Y.281, A:T.309, A:W.336, A:W.336 Hydrogen bonds: A:G.134, A:K.165, A:D.241, A:N.371

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 2 residues within 4Å: Chain A: D.541, K.561 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Q.534, A:K.561 Salt bridges: A:K.561

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: Y.136, D.343, Y.344, R.346, Y.549, Q.550 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.343, A:R.346, A:Q.550, A:Q.550 Water bridges: A:Y.549

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Whitworth, G.E. et al., Analysis of Pugnac and Nag-Thiazoline as Transition State Analogues for Human O-Glcnacase: Mechanistic and Structural Insights Into Inhibitor Selectivity and Transition State Poise. J.Am.Chem.Soc. (2007)

Release Date

2007-01-30

Peptides

HYALURONOGLUCOSAMINIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HYALURONOGLUCOSAMINIDASE

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