SMTL ID : 2j55.1

X-ray reduced Paraccocus denitrificans methylamine dehydrogenase O- quinone in complex with amicyanin.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-oligomer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 5 residues within 4Å: Chain A: P.52, H.53, C.92, H.95, M.98 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.53, A:C.92, A:H.95 CU.2: 5 residues within 4Å: Chain B: P.52, H.53, C.92, H.95, M.98 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.53, B:C.92, B:H.95

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain C: F.220, H.250, F.261, L.262, A.264 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.250 GOL.4: 5 residues within 4Å: Chain C: H.54, F.55, W.282, Q.378 Chain E: L.89 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:H.54, C:Q.378 Water bridges: C:H.54, C:Q.378, C:Q.378 GOL.5: 6 residues within 4Å: Chain C: Q.14, A.18, R.70 Chain F: Q.21, D.37, S.42 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain F Hydrogen bonds: C:Q.14, C:R.70, F:Q.21 Water bridges: F:D.37 GOL.6: 5 residues within 4Å: Chain C: R.305 Chain E: C.23, C.88, L.89, N.90 5 PLIP interactions: 3 interactions with chain E, 2 interactions with chain C Hydrogen bonds: E:P.87, E:L.89, C:R.305, C:R.305 Water bridges: E:L.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pearson, A.R. et al., Tracking X-Ray-Derived Redox Changes in Crystals of a Methylamine Dehydrogenase/Amicyanin Complex Using Single-Crystal Uv/Vis Microspectrophotometry. J.Synchrotron Radiat. (2007)

Release Date

2007-01-23

Peptides

AMICYANIN: AB
METHYLAMINE DEHYDROGENASE HEAVY CHAIN: CD
METHYLAMINE DEHYDROGENASE LIGHT CHAIN: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

D
J

E
L

F
M

AMICYANIN

METHYLAMINE DEHYDROGENASE HEAVY CHAIN

METHYLAMINE DEHYDROGENASE LIGHT CHAIN

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