SMTL ID : 2j7c.2 (1 other biounit)

Beta-glucosidase from Thermotoga maritima in complex with phenylaminomethyl-derived glucoimidazole

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x IDE: (5R,6R,7S,8S)-3-(ANILINOMETHYL)-5,6,7,8-TETRAHYDRO-5-(HYDROXYMETHYL)-IMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL(Non-covalent)

IDE.1: 15 residues within 4Å: Chain A: Q.42, H.143, W.144, N.187, E.188, W.190, N.244, N.245, Y.317, W.346, E.373, W.420, E.427, W.428, F.436 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.190, A:N.244 Hydrogen bonds: A:Q.42, A:Q.42, A:H.143, A:N.187, A:N.315, A:E.427 Water bridges: A:N.425

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: D.300, S.303, E.304 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.300, H2O.7, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gloster, T.M. et al., Glycosidase Inhibition: An Assessment of the Binding of 18 Putative Transition-State Mimics. J.Am.Chem.Soc. (2007)

Release Date

2006-10-17

Peptides

BETA-GLUCOSIDASE A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

BETA-GLUCOSIDASE A

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