- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x TTP: THYMIDINE-5'-TRIPHOSPHATE(Non-covalent)
TTP.2: 19 residues within 4Å:- Chain A: S.18, F.20, S.21, G.22, K.23, S.24, E.25, R.51, V.58, S.59, H.60, N.61, D.90, E.91, A.145, V.146, P.183
- Chain C: R.33, F.36
20 PLIP interactions:17 interactions with chain A, 3 interactions with chain C- Hydrogen bonds: A:F.20, A:S.21, A:S.21, A:G.22, A:K.23, A:S.24, A:S.24, A:E.25, A:E.25, A:H.60, A:E.91, A:V.146
- Water bridges: A:K.23, A:K.23
- Salt bridges: A:K.23, A:K.23, A:R.51
- Hydrophobic interactions: C:R.33, C:F.36
- pi-Stacking: C:F.36
TTP.5: 19 residues within 4Å:- Chain B: S.18, F.20, S.21, G.22, K.23, S.24, E.25, R.51, V.58, S.59, H.60, N.61, D.90, E.91, A.145, V.146, P.183
- Chain D: R.33, F.36
22 PLIP interactions:3 interactions with chain D, 19 interactions with chain B- Hydrophobic interactions: D:R.33, D:F.36
- pi-Stacking: D:F.36
- Hydrogen bonds: B:F.20, B:S.21, B:S.21, B:G.22, B:K.23, B:S.24, B:S.24, B:E.25, B:E.25, B:H.60, B:H.60, B:E.91, B:E.91, B:V.146
- Water bridges: B:K.23, B:K.23
- Salt bridges: B:K.23, B:K.23, B:R.51
TTP.8: 19 residues within 4Å:- Chain A: R.33, F.36
- Chain C: S.18, F.20, S.21, G.22, K.23, S.24, E.25, R.51, V.58, S.59, H.60, N.61, D.90, E.91, A.145, V.146, P.183
20 PLIP interactions:17 interactions with chain C, 3 interactions with chain A- Hydrogen bonds: C:F.20, C:S.21, C:S.21, C:G.22, C:K.23, C:S.24, C:S.24, C:E.25, C:E.25, C:H.60, C:E.91, C:V.146
- Water bridges: C:K.23, C:K.23
- Salt bridges: C:K.23, C:K.23, C:R.51
- Hydrophobic interactions: A:R.33, A:F.36
- pi-Stacking: A:F.36
TTP.11: 19 residues within 4Å:- Chain B: R.33, F.36
- Chain D: S.18, F.20, S.21, G.22, K.23, S.24, E.25, R.51, V.58, S.59, H.60, N.61, D.90, E.91, A.145, V.146, P.183
22 PLIP interactions:19 interactions with chain D, 3 interactions with chain B- Hydrogen bonds: D:F.20, D:S.21, D:S.21, D:G.22, D:K.23, D:S.24, D:S.24, D:E.25, D:E.25, D:H.60, D:H.60, D:E.91, D:E.91, D:V.146
- Water bridges: D:K.23, D:K.23
- Salt bridges: D:K.23, D:K.23, D:R.51
- Hydrophobic interactions: B:R.33, B:F.36
- pi-Stacking: B:F.36
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.3: 8 residues within 4Å:- Chain A: F.94, L.118, D.121, F.122, F.127, T.157, I.172, Y.181
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:F.94, A:F.122, A:T.157, A:Y.181
- Hydrogen bonds: A:F.122, A:Y.181
MPD.6: 8 residues within 4Å:- Chain B: F.94, L.118, D.121, F.122, F.127, T.157, I.172, Y.181
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:F.94, B:F.122, B:T.157, B:Y.181
- Hydrogen bonds: B:F.122
MPD.9: 8 residues within 4Å:- Chain C: F.94, L.118, D.121, F.122, F.127, T.157, I.172, Y.181
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:F.94, C:F.122, C:T.157, C:Y.181
- Hydrogen bonds: C:F.122, C:Y.181
MPD.12: 8 residues within 4Å:- Chain D: F.94, L.118, D.121, F.122, F.127, T.157, I.172, Y.181
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:F.94, D:F.122, D:T.157, D:Y.181
- Hydrogen bonds: D:F.122
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kosinska, U. et al., Structural Studies of Thymidine Kinases from Bacillus Anthracis and Bacillus Cereus Provide Insights Into Quaternary Structure and Conformational Changes Upon Substrate Binding. FEBS J. (2007)
- Release Date
- 2007-01-23
- Peptides
- THYMIDINE KINASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x TTP: THYMIDINE-5'-TRIPHOSPHATE(Non-covalent)
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kosinska, U. et al., Structural Studies of Thymidine Kinases from Bacillus Anthracis and Bacillus Cereus Provide Insights Into Quaternary Structure and Conformational Changes Upon Substrate Binding. FEBS J. (2007)
- Release Date
- 2007-01-23
- Peptides
- THYMIDINE KINASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A