SMTL ID : 2jb8.1

Deacetoxycephalosporin C synthase complexed with 5-hydroxy-4-keto valeric acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

homo-trimer

Ligands

3 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: H.183, D.185, H.243 Ligands: HKV.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.183, A:D.185, A:H.243, H2O.6 FE.3: 4 residues within 4Å: Chain B: H.183, D.185, H.243 Ligands: HKV.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.183, B:D.185, B:H.243, H2O.14 FE.5: 4 residues within 4Å: Chain C: H.183, D.185, H.243 Ligands: HKV.6 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.183, C:D.185, C:H.243, H2O.22

3 x HKV: 4,5-DIOXOPENTANOIC ACID(Non-covalent)

HKV.2: 11 residues within 4Å: Chain A: M.180, H.183, D.185, L.204, H.243, V.245, R.258, S.260, F.264, I.305 Ligands: FE.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.204 Hydrogen bonds: A:S.260 Salt bridges: A:R.258 HKV.4: 11 residues within 4Å: Chain B: M.180, H.183, D.185, L.204, H.243, V.245, R.258, S.260, F.264, I.305 Ligands: FE.3 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.204 Hydrogen bonds: B:S.260 Salt bridges: B:R.258 HKV.6: 11 residues within 4Å: Chain C: M.180, H.183, D.185, L.204, H.243, V.245, R.258, S.260, F.264, I.305 Ligands: FE.5 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:L.204 Hydrogen bonds: C:S.260 Salt bridges: C:R.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cicero, G. et al., Study of the Oxidative Half-Reaction Catalysed by a Non-Heme Ferrous Catalytic Centre by Means of Structural and Computational Methodologies. Int.J.Quantum Chem. (2007)

Release Date

2008-02-05

Peptides

DEACETOXYCEPHALOSPORIN C SYNTHETASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

DEACETOXYCEPHALOSPORIN C SYNTHETASE

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