SMTL ID : 2je8.2 (1 other biounit)

STRUCTURE OF A BETA-MANNOSIDASE FROM BACTEROIDES THETAIOTAOMICRON

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

B3P.1: 14 residues within 4Å: Chain A: W.175, D.176, W.372, C.401, N.438, E.439, W.447, W.496, W.510, Y.514, E.532, S.567, W.622, W.633 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:W.175, A:N.438, A:E.439, A:W.496, A:Y.514, A:E.532, A:S.567, A:S.567 Water bridges: A:N.155, A:D.176, A:Y.514 B3P.2: 8 residues within 4Å: Chain A: Y.204, R.206, E.220, R.426, E.479, F.480, D.481, S.482 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.206, A:E.220, A:R.426, A:E.479, A:F.480, A:S.482 Water bridges: A:R.426, A:D.483

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: Q.342, R.353, N.625, D.626, I.636, D.637, Y.638 Ligands: GOL.8 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.342, A:R.353, A:N.625, A:D.626, A:I.636, A:Y.638 GOL.4: 7 residues within 4Å: Chain A: R.574, I.583, P.584, E.585, S.586, F.587, F.590 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.574, A:R.574, A:E.585, A:S.586 GOL.5: 4 residues within 4Å: Chain A: D.692, R.731, P.762, M.785 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.731 Water bridges: A:R.731 GOL.6: 4 residues within 4Å: Chain A: Y.324, P.331, P.614, M.617 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.614 Water bridges: A:S.322, A:R.528, A:P.614 GOL.7: 10 residues within 4Å: Chain A: V.205, Q.207, I.305, G.306, R.308, R.426, N.427, H.428, A.429, R.484 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.306, A:G.306, A:R.426 Water bridges: A:Q.207, A:Q.207, A:R.308, A:A.429, A:R.484, A:R.484 GOL.8: 4 residues within 4Å: Chain A: R.353, Y.638, Y.639 Ligands: GOL.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.638 Water bridges: A:D.343, A:R.353, A:Y.639

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.9: 5 residues within 4Å: Chain A: G.83, I.84, P.117, V.118, K.119 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tailford, L.E. et al., Mannose Foraging by Bacteroides Thetaiotaomicron: Structure and Specificity of the Beta-Mannosidase, Btman2A. J.Biol.Chem. (2007)

Release Date

2007-02-06

Peptides

BETA-MANNOSIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

BETA-MANNOSIDASE

Related Entries With Identical Sequence