SMTL ID : 2jea.1

Structure of a 9-subunit archaeal exosome bound to RNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

hetero-3-3-3-mer

Ligands

3 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 6 residues within 4Å: Chain A: T.45, Y.48, L.57, K.59 Chain F: E.36, V.39 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain F Hydrogen bonds: A:T.45, A:K.59, F:V.39 1PE.2: 6 residues within 4Å: Chain E: T.45, Y.48, L.57, K.59 Chain J: E.36, V.39 2 PLIP interactions: 1 interactions with chain J, 1 interactions with chain E Hydrogen bonds: J:V.39, E:K.59 1PE.3: 6 residues within 4Å: Chain B: E.36, V.39 Chain I: T.45, Y.48, L.57, K.59 2 PLIP interactions: 1 interactions with chain I, 1 interactions with chain B Hydrogen bonds: I:K.59, B:V.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lorentzen, E. et al., RNA Channelling by the Archaeal Exosome. Embo Rep. (2007)

Release Date

2007-04-03

Peptides

EXOSOME COMPLEX EXONUCLEASE 2: AEI
EXOSOME COMPLEX EXONUCLEASE 1: BFJ
EXOSOME COMPLEX RNA-BINDING PROTEIN 1: DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

B
B

F
B

J
B

D
I

H
I

L
I

EXOSOME COMPLEX EXONUCLEASE 2

EXOSOME COMPLEX EXONUCLEASE 1

EXOSOME COMPLEX RNA-BINDING PROTEIN 1

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