SMTL ID : 2jf2.1

Nucleotide substrate binding by UDP-N-acetylglucosamine acyltransferase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 5 residues within 4Å: Chain A: G.198, V.199, I.201, R.218, K.222 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.199, A:R.218 PEG.3: 5 residues within 4Å: Chain B: G.198, V.199, I.201, R.218, K.222 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.199, B:R.218 PEG.5: 5 residues within 4Å: Chain C: G.198, V.199, I.201, R.218, K.222 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:V.199, C:R.218

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: K.222, R.226 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.222, A:R.226 Water bridges: A:K.222, A:R.226, A:R.226, A:R.226, A:R.226, A:R.226 EDO.4: 2 residues within 4Å: Chain B: K.222, R.226 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:K.222, B:R.226 Water bridges: B:K.222, B:R.226, B:R.226, B:R.226, B:R.226, B:R.226 EDO.6: 2 residues within 4Å: Chain C: K.222, R.226 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:K.222, C:R.226 Water bridges: C:K.222, C:R.226, C:R.226, C:R.226, C:R.226, C:R.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ulaganathan, V. et al., Nucleotide Substrate Recognition by Udp-N-Acetylglucosamine Acyltransferase (Lpxa) in the First Step of Lipid a Biosynthesis. J.Mol.Biol. (2007)

Release Date

2007-04-24

Peptides

ACYL-[ACYL-CARRIER-PROTEIN]--UDP-N-ACETYLGLUCOSAMINE O-ACYLTRANSFERASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

ACYL-[ACYL-CARRIER-PROTEIN]--UDP-N-ACETYLGLUCOSAMINE O-ACYLTRANSFERASE