SMTL ID : 2jig.1 (1 other biounit)

Crystal structure of Chlamydomonas reinhardtii prolyl-4 hydroxylase type I complexed with zinc and pyridine-2,4-dicarboxylate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.114, D.116, H.198 Ligands: PD2.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.114, A:D.116, A:H.198 ZN.2: 2 residues within 4Å: Chain A: H.106, D.207 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.106, A:D.207, A:D.207, H2O.10, H2O.10

1 x PD2: PYRIDINE-2,4-DICARBOXYLIC ACID(Non-covalent)

PD2.3: 15 residues within 4Å: Chain A: L.103, Y.105, Y.111, H.114, D.116, L.137, T.149, H.198, G.199, S.200, K.208, S.210, T.212, W.214 Ligands: ZN.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.137, A:L.137 Hydrogen bonds: A:Y.105, A:S.200, A:S.210 Salt bridges: A:H.114, A:K.208

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 9 residues within 4Å: Chain A: V.46, K.47, S.48, S.49, R.64, G.68, V.122, N.123, A.124 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:V.46, A:S.48, A:S.49, A:R.64 Water bridges: A:S.49, A:P.121, A:N.123

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 1 residues within 4Å: Chain A: K.57 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koski, M.K. et al., The Active Site of an Algal Prolyl 4-Hydroxylase Has a Large Structural Plasticity. J.Biol.Chem. (2007)

Release Date

2007-10-30

Peptides

PROLYL-4 HYDROXYLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROLYL-4 HYDROXYLASE

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