SMTL ID : 2jkn.4 (5 other biounits)

DraE Adhesin in complex with Chloramphenicol Succinate (trigonal form)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-trimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: G.34, D.35 Chain B: T.18, G.19, T.20 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.20, A:D.35 Water bridges: B:T.18, B:T.20 SO4.2: 3 residues within 4Å: Chain A: D.62, G.116, S.117 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.117, A:S.117 Water bridges: A:S.117, A:S.117 SO4.6: 5 residues within 4Å: Chain B: G.34, D.35 Chain C: T.18, G.19, T.20 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:T.20, B:D.35 Water bridges: C:T.18, C:T.20 SO4.7: 3 residues within 4Å: Chain B: D.62, G.116, S.117 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.117, B:S.117 Water bridges: B:S.117, B:S.117 SO4.11: 5 residues within 4Å: Chain A: T.18, G.19, T.20 Chain C: G.34, D.35 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:T.20, C:D.35 Water bridges: A:T.18, A:T.20 SO4.12: 3 residues within 4Å: Chain C: D.62, G.116, S.117 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.117, C:S.117 Water bridges: C:S.117, C:S.117

3 x CL8: CHLORAMPHENICOL SUCCINATE

CL8.3: 8 residues within 4Å: Chain A: P.50, I.51, G.52, P.53, I.121, G.123, I.124, Y.125 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.50, A:P.53 Halogen bonds: A:I.124 CL8.8: 8 residues within 4Å: Chain B: P.50, I.51, G.52, P.53, I.121, G.123, I.124, Y.125 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:P.50, B:P.53 Halogen bonds: B:I.124 CL8.13: 8 residues within 4Å: Chain C: P.50, I.51, G.52, P.53, I.121, G.123, I.124, Y.125 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:P.50, C:P.53 Halogen bonds: C:I.124

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 9 residues within 4Å: Chain A: P.14, S.15, G.16 Chain C: T.24, V.25, T.26, P.135, G.136, N.137 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:V.25, C:G.136, A:G.16 EDO.5: 5 residues within 4Å: Chain A: S.84, N.86, D.89, P.134, P.135 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.84, A:S.84, A:N.86, A:D.89 EDO.9: 9 residues within 4Å: Chain A: T.24, V.25, T.26, P.135, G.136, N.137 Chain B: P.14, S.15, G.16 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:G.16, A:V.25, A:G.136 EDO.10: 5 residues within 4Å: Chain B: S.84, N.86, D.89, P.134, P.135 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.84, B:S.84, B:N.86, B:D.89 EDO.14: 9 residues within 4Å: Chain B: T.24, V.25, T.26, P.135, G.136, N.137 Chain C: P.14, S.15, G.16 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:V.25, B:G.136, C:G.16 EDO.15: 5 residues within 4Å: Chain C: S.84, N.86, D.89, P.134, P.135 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.84, C:S.84, C:N.86, C:D.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pettigrew, D.M. et al., A structural study of the interaction between the Dr haemagglutinin DraE and derivatives of chloramphenicol. Acta Crystallogr. D Biol. Crystallogr. (2009)

Release Date

2008-12-16

Peptides

DR HEMAGGLUTININ STRUCTURAL SUBUNIT: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
D

C
D

DR HEMAGGLUTININ STRUCTURAL SUBUNIT

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