SMTL ID : 2ki5.1

HERPES SIMPLEX TYPE-1 THYMIDINE KINASE IN COMPLEX WITH THE DRUG ACICLOVIR AT 1.9A RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: H.48, G.49, M.50, G.51, K.52, T.53, R.212 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:G.49, A:M.50, A:G.51, A:K.52, A:T.53, A:T.53 Water bridges: A:K.52, A:T.54, A:T.54, A:E.73, A:K.209, A:R.212 Salt bridges: A:K.52, A:R.212 SO4.3: 7 residues within 4Å: Chain B: H.48, G.49, M.50, G.51, K.52, T.53, R.212 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.49, B:M.50, B:G.51, B:K.52, B:T.53 Water bridges: B:K.52, B:K.52 Salt bridges: B:K.52, B:R.212

2 x AC2: 9-HYROXYETHOXYMETHYLGUANINE(Non-covalent)

AC2.2: 10 residues within 4Å: Chain A: H.48, I.87, I.90, Y.91, Q.115, M.118, Y.162, R.166, R.212, E.215 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.91, A:Q.115, A:Q.115, A:Q.115, A:R.166, A:E.215 Water bridges: A:R.212 pi-Stacking: A:Y.162 AC2.4: 12 residues within 4Å: Chain B: H.48, E.73, W.78, I.87, I.90, Y.91, Q.115, M.118, R.153, Y.162, R.166, R.212 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:E.73, B:Q.115, B:Q.115, B:Q.115, B:R.153, B:R.166 pi-Stacking: B:Y.162, B:Y.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bennett, M.S. et al., Structure to 1.9 A resolution of a complex with herpes simplex virus type-1 thymidine kinase of a novel, non-substrate inhibitor: X-ray crystallographic comparison with binding of aciclovir. FEBS Lett. (1999)

Release Date

1999-03-04

Peptides

PROTEIN (THYMIDINE KINASE): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEIN (THYMIDINE KINASE)

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