SMTL ID : 2ncd.1

NCD (NON-CLARET DISJUNCTIONAL) DIMER FROM D. MELANOGASTER

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: H.339, I.340, P.341, Y.342, R.343 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.342, A:R.343 Salt bridges: A:H.339, A:R.343 SO4.2: 6 residues within 4Å: Chain A: E.221, I.222, R.343, S.345, K.346, H.349 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.346, A:H.349 SO4.3: 2 residues within 4Å: Chain A: R.223, M.224 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.224 Salt bridges: A:R.223 SO4.4: 4 residues within 4Å: Chain A: R.249, M.252, H.253, K.256 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.253 SO4.6: 5 residues within 4Å: Chain B: H.339, I.340, P.341, Y.342, R.343 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.342, B:R.343 Salt bridges: B:H.339, B:R.343 SO4.7: 6 residues within 4Å: Chain B: E.221, I.222, R.343, S.345, K.346, H.349 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.346, B:H.349 SO4.8: 2 residues within 4Å: Chain B: R.223, M.224 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:M.224 Salt bridges: B:R.223 SO4.9: 4 residues within 4Å: Chain B: R.249, M.252, H.253, K.256 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:H.253

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.5: 12 residues within 4Å: Chain A: R.74, R.76, P.77, L.79, Q.155, T.156, G.157, S.158, G.159, K.160, T.161, Y.162 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:Q.155, A:G.157, A:S.158, A:G.159, A:G.159, A:K.160, A:T.161, A:T.161, A:Y.162 Water bridges: A:S.126, A:Y.162 Salt bridges: A:K.160 pi-Stacking: A:Y.162, A:Y.162 ADP.10: 12 residues within 4Å: Chain B: R.74, R.76, P.77, L.79, Q.155, T.156, G.157, S.158, G.159, K.160, T.161, Y.162 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:Q.155, B:G.157, B:S.158, B:G.159, B:G.159, B:K.160, B:T.161, B:Y.162 Water bridges: B:S.126, B:Y.162 Salt bridges: B:K.160 pi-Stacking: B:Y.162, B:Y.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sablin, E.P. et al., Direction determination in the minus-end-directed kinesin motor ncd. Nature (1998)

Release Date

1999-06-09

Peptides

PROTEIN (Kinesin motor NCD): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PROTEIN (Kinesin motor NCD)