SMTL ID : 2nmt.1

MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE BOUND TO MYRISTOYL-COA AND PEPTIDE ANALOGS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x NHM: S-(2-OXO)PENTADECYLCOA(Non-covalent)

NHM.1: 32 residues within 4Å: Chain A: H.5, K.6, F.7, W.8, N.69, Y.70, V.71, I.135, N.136, F.137, L.138, C.139, V.140, R.145, S.146, K.147, R.148, L.149, T.150, P.151, I.154, T.158, W.167, H.168, A.169, Y.171, T.172, A.173, I.175, L.177, F.392 Ligands: MIM.2 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:Y.70, A:V.71, A:I.135, A:L.138, A:L.138, A:V.140, A:I.154, A:T.158, A:Y.171, A:Y.171, A:F.392 Hydrogen bonds: A:H.5, A:K.6, A:F.7, A:W.8, A:F.137, A:L.138, A:L.138, A:V.140, A:R.145, A:S.146, A:R.148, A:L.149, A:T.150, A:T.150 Salt bridges: A:H.5, A:R.148

1 x MIM: [CYCLOHEXYLETHYL]-[[[[4-[2-METHYL-1-IMIDAZOLYL-BUTYL]PHENYL]ACETYL]-SERYL]-LYSINYL]-AMINE(Non-covalent)

MIM.2: 24 residues within 4Å: Chain A: V.71, E.72, D.73, D.75, F.80, Y.82, N.136, T.172, A.173, G.174, Y.186, H.188, P.190, F.201, T.202, F.301, G.381, P.382, G.383, D.384, G.385, M.421, L.422 Ligands: NHM.1 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:V.71, A:F.80, A:Y.186, A:P.190, A:F.201, A:T.202, A:F.301, A:M.421 Hydrogen bonds: A:D.73, A:D.75, A:D.75, A:Y.82, A:F.201, A:D.384, A:D.384, A:D.384, A:G.385, A:G.385

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: P.205, H.208, M.213, E.216 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.216 GOL.4: 1 residues within 4Å: Chain A: D.212 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.212 GOL.5: 2 residues within 4Å: Chain A: C.164 Ligands: GOL.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.164 GOL.6: 2 residues within 4Å: Chain A: K.92, H.263 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.92 Water bridges: A:I.266 GOL.7: 7 residues within 4Å: Chain A: K.230, F.265, I.266, G.267, Q.276, I.278, S.280 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.265, A:G.267, A:I.278, A:S.280 GOL.8: 1 residues within 4Å: Chain A: D.274 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.274 GOL.9: 4 residues within 4Å: Chain A: P.25, P.131, W.167, H.168 No protein-ligand interaction detected (PLIP) GOL.10: 6 residues within 4Å: Chain A: E.47, W.48, C.49, S.50, Q.58, R.105 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.48, A:S.50, A:S.50, A:R.105 GOL.11: 3 residues within 4Å: Chain A: D.99 Ligands: GOL.5, GOL.13 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.99 GOL.12: 5 residues within 4Å: Chain A: E.284, Q.285, P.286, D.287, G.288 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.284 GOL.13: 3 residues within 4Å: Chain A: D.37, K.163 Ligands: GOL.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.37 GOL.14: 1 residues within 4Å: Chain A: D.52 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bhatnagar, R.S. et al., Structure of N-myristoyltransferase with bound myristoylCoA and peptide substrate analogs. Nat.Struct.Biol. (1998)

Release Date

1999-01-06

Peptides

MYRISTOYL-COA\:PROTEIN N-MYRISTOYLTRANSFERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MYRISTOYL-COA\:PROTEIN N-MYRISTOYLTRANSFERASE

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