SMTL ID : 2nmv.1

Damage detection by the UvrABC pathway: Crystal structure of UvrB bound to fluorescein-adducted DNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x DT- DT- DT- DT- DT: 5'-D(P*TP*TP*TP*TP*T)-3'(Non-covalent)

DT-DT-DT-DT-DT.1: 20 residues within 4Å: Chain A: H.65, N.66, K.67, V.90, S.91, Y.92, Y.93, Y.96, P.98, S.141, S.143, Y.146, E.307, Q.346, M.350, R.357, I.479, K.480, T.481 Ligands: NML.2 Protein-ligand interaction information (PLIP) not available

1 x NML: N-METHYLACETAMIDE(Non-functional Binders)

NML.2: 2 residues within 4Å: Ligands: DT-DT-DT-DT-DT.1, DT-DT-DT-DT-DT.1 No protein-ligand interaction detected (PLIP)

1 x FLU: 2-(6-HYDROXY-3-OXO-3H-XANTHEN-9-YL)-BENZOIC ACID(Non-covalent)

FLU.3: 5 residues within 4Å: Chain A: G.71, Y.74, S.75, N.116, I.119 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.74, A:I.119 Hydrogen bonds: A:S.75, A:N.116

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.4: 15 residues within 4Å: Chain A: Y.11, Q.12, Q.14, Q.17, A.40, T.41, G.42, T.43, G.44, K.45, T.46, F.47, E.76, P.414, R.543 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:Q.12, A:Q.12, A:Q.14, A:Q.17, A:G.42, A:T.43, A:G.44, A:K.45, A:T.46, A:R.543 Salt bridges: A:K.45, A:R.543 pi-Stacking: A:Y.11, A:Y.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Waters, T.R. et al., Damage detection by the UvrABC pathway: crystal structure of UvrB bound to fluorescein-adducted DNA. Febs Lett. (2006)

Release Date

2007-01-16

Peptides

UvrABC system protein B: A
UvrABC system protein B: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

UvrABC system protein B

UvrABC system protein B

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