SMTL ID : 2npf.1 (1 other biounit)

Structure of eEF2 in complex with moriniafungin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x MOU: (1S,4R,5R,9S,11S)-2-({[(2S,5R,6R,7R,9S,10R)-2-(7-CARBOXYHEPTYL)-6-HYDROXY-10-METHOXY-9-METHYL-3-OXO-1,4,8-TRIOXASPIRO[4 .5]DEC-7-YL]OXY}METHYL)-9-FORMYL-13-ISOPROPYL-5-METHYLTETRACYCLO[7.4.0.02,11.04.8]TRIDEC-12-ENE-1-CARBOXYLIC ACID(Non-covalent)

MOU.1: 23 residues within 4Å: Chain A: P.487, V.488, V.489, Q.490, L.519, Y.521, S.523, E.524, I.529, V.560, V.561, A.562, P.727, F.729, V.774, S.777, G.779, F.780, T.781, M.796, V.797, F.798, W.801 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Q.490, A:Y.521, A:I.529, A:P.727, A:F.729, A:V.774, A:T.781, A:F.798, A:F.798, A:F.798, A:W.801 Hydrogen bonds: A:Q.490, A:Y.521, A:E.524, A:A.562, A:G.779, A:T.781, A:F.798

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 14 residues within 4Å: Chain A: H.27, V.28, D.29, H.30, G.31, K.32, S.33, T.34, N.158, K.159, D.161, S.213, G.214, L.215 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:H.27, A:D.29, A:H.30, A:G.31, A:K.32, A:S.33, A:S.33, A:S.33, A:T.34, A:N.158, A:K.159, A:K.159, A:S.213, A:G.214, A:L.215 Salt bridges: A:D.161 pi-Cation interactions: A:K.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Soe, R. et al., Sordarin derivatives induce a novel conformation of the yeast ribosome translocation factor eEF2. J.Biol.Chem. (2007)

Release Date

2006-11-14

Peptides

Elongation factor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Elongation factor 2

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