SMTL ID : 2nyh.2 (2 other biounits)

Crystal structure of putative dioxygenase (YP_555069.1) from Burkholderia Xenovorans LB400 at 1.70 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: V.112, L.113, S.114 Chain B: R.46, R.50 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:R.50, A:S.114, A:S.114 Salt bridges: B:R.46 Water bridges: A:L.113, A:L.113 SO4.2: 6 residues within 4Å: Chain A: R.46, F.47, H.48, E.49, R.50 Chain C: K.41 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:E.49 Water bridges: A:R.46, A:R.46, A:H.48, A:R.50 Salt bridges: A:R.46, A:H.48, A:R.50, C:K.41 SO4.3: 3 residues within 4Å: Chain A: Q.33, H.37, W.75 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.33, A:W.75 Salt bridges: A:H.37 SO4.4: 5 residues within 4Å: Chain A: R.46, R.50 Chain B: V.112, L.113, S.114 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.114, B:S.114, A:R.50 Water bridges: B:L.113, B:L.113 Salt bridges: A:R.46 SO4.5: 6 residues within 4Å: Chain B: R.46, F.47, H.48, E.49, R.50 Chain D: K.41 9 PLIP interactions: 1 interactions with chain D, 8 interactions with chain B Salt bridges: D:K.41, B:R.46, B:H.48, B:R.50 Hydrogen bonds: B:E.49 Water bridges: B:R.46, B:R.46, B:R.50, B:R.50 SO4.6: 3 residues within 4Å: Chain B: Q.33, H.37, W.75 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.33, B:W.75 Salt bridges: B:H.37 SO4.7: 4 residues within 4Å: Chain A: K.41 Chain C: R.46, H.48, R.50 5 PLIP interactions: 5 interactions with chain C Water bridges: C:R.46, C:R.46 Salt bridges: C:R.46, C:H.48, C:R.50 SO4.8: 3 residues within 4Å: Chain C: G.45, R.46, H.48 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:R.46 Water bridges: C:H.48, C:Q.61, C:Q.61, C:Q.61 Salt bridges: C:R.46, C:H.48 SO4.9: 4 residues within 4Å: Chain B: K.41 Chain D: R.46, H.48, R.50 5 PLIP interactions: 5 interactions with chain D Water bridges: D:R.46, D:R.46 Salt bridges: D:R.46, D:H.48, D:R.50 SO4.10: 3 residues within 4Å: Chain D: G.45, R.46, H.48 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:R.46 Water bridges: D:H.48, D:Q.61, D:Q.61, D:Q.61 Salt bridges: D:R.46, D:H.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of putative Dioxygenase (YP_555069.1) from Burkholderia Xenovorans LB400 at 1.70 A resolution. To be published

Release Date

2006-12-12

Peptides

Putative dioxygenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
B

D
B

Putative dioxygenase

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