SMTL ID : 2nzy.2 (1 other biounit)

Crystal Structure of alpha1,3-Fucosyltransferase with GDP-fucose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x FUC: alpha-L-fucopyranose(Non-covalent)

FUC.1: 8 residues within 4Å: Chain A: G.94, L.124, N.240, Y.246, T.248, E.249, K.250 Ligands: GDP.3 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.240, A:Y.246, A:Y.246, A:T.248, A:T.248, A:K.250 Water bridges: A:N.240, A:Y.246 FUC.4: 8 residues within 4Å: Chain B: G.94, L.124, N.240, Y.246, T.248, E.249, K.250 Ligands: GDP.6 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:N.240, B:Y.246, B:Y.246, B:T.248, B:T.248, B:K.250 Water bridges: B:N.240, B:Y.246

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: H.300, K.301, N.302, A.303 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.300, A:N.302, A:N.302, A:A.303 Salt bridges: A:H.300 SO4.5: 4 residues within 4Å: Chain B: H.300, K.301, N.302, A.303 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:H.300, B:N.302, B:N.302, B:A.303 Salt bridges: B:H.300

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 16 residues within 4Å: Chain A: V.186, A.187, S.188, N.189, R.195, G.211, G.212, N.221, V.222, K.223, K.225, N.240, E.249, K.250, D.253 Ligands: FUC.1 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:V.186, A:S.188, A:S.188, A:N.189, A:N.189, A:V.222, A:K.225, A:N.240, A:E.249 Water bridges: A:K.225, A:N.240 Salt bridges: A:R.195, A:R.195, A:K.250, A:K.250 GDP.6: 16 residues within 4Å: Chain B: V.186, A.187, S.188, N.189, R.195, G.211, G.212, N.221, V.222, K.223, K.225, N.240, E.249, K.250, D.253 Ligands: FUC.4 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:V.186, B:S.188, B:S.188, B:N.189, B:N.189, B:V.222, B:K.225, B:N.240, B:E.249 Water bridges: B:K.225, B:N.240 Salt bridges: B:R.195, B:R.195, B:K.250, B:K.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, H.Y. et al., Structure and mechanism of Helicobacter pylori fucosyltransferase. A basis for lipopolysaccharide variation and inhibitor design. J. Biol. Chem. (2007)

Release Date

2007-01-23

Peptides

Alpha1,3-Fucosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

Alpha1,3-Fucosyltransferase

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