SMTL ID : 2o2z.1 (1 other biounit)

Crystal structure of a protein member of the upf0052 family (bh3568) from bacillus halodurans at 2.60 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: G.41, S.42, S.43, G.56, R.59, R.79, N.93 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.42, A:S.43, A:N.93 Water bridges: A:S.43 Salt bridges: A:R.59, A:R.79 SO4.2: 8 residues within 4Å: Chain A: G.12, G.13, T.14, G.15, G.187, S.188, S.192 Ligands: NAD.3 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.12, A:G.13, A:T.14, A:G.15, A:S.188, A:S.188, A:S.192 Water bridges: A:S.188 SO4.4: 8 residues within 4Å: Chain B: G.40, G.41, S.42, S.43, G.56, R.59, R.79, N.93 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.40, B:S.42, B:S.43, B:N.93 Water bridges: B:S.43 Salt bridges: B:R.59, B:R.79 SO4.5: 7 residues within 4Å: Chain B: G.12, G.13, T.14, G.187, S.188, S.192 Ligands: NAD.6 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.12, B:G.13, B:T.14, B:G.15, B:S.188, B:S.192 Water bridges: B:L.16, B:S.188, B:Q.222

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.3: 16 residues within 4Å: Chain A: T.14, G.15, P.186, G.187, S.188, N.218, V.219, M.220, Q.222, K.264, Y.265, E.268, V.299, R.301, H.302 Ligands: SO4.2 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:P.186, A:V.219, A:H.302 Hydrogen bonds: A:T.14, A:T.14, A:N.218, A:V.219, A:K.264, A:K.264, A:Y.265, A:R.301, A:R.301, A:H.302, A:H.302 Water bridges: A:Q.222, A:T.226, A:T.226, A:T.226 Salt bridges: A:R.301, A:R.301 NAD.6: 15 residues within 4Å: Chain B: T.14, G.15, G.187, S.188, N.218, V.219, M.220, Q.222, K.264, Y.265, E.268, V.299, R.301, H.302 Ligands: SO4.5 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:V.219 Hydrogen bonds: B:T.14, B:V.219, B:Q.222, B:K.264, B:E.268, B:R.301, B:R.301, B:H.302, B:H.302 Water bridges: B:S.188, B:Q.222, B:T.226 Salt bridges: B:R.301, B:R.301 pi-Stacking: B:Y.265

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of hypothetical protein (NP_244435.1) from Bacillus halodurans at 2.60 A resolution. To be published

Release Date

2006-12-19

Peptides

hypothetical protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

hypothetical protein

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