SMTL ID : 2o3u.1 (1 other biounit)

Structural Basis for Formation and Hydrolysis of Calcium Messenger Cyclic ADP-ribose by Human CD38

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

1 x NGD: 3-(AMINOCARBONYL)-1-[(2R,3R,4S,5R)-5-({[(S)-{[(S)-{[(2R,3S,4R,5R)-5-(2-AMINO-6-OXO-1,6-DIHYDRO-9H-PURIN-9-YL)-3,4-DIHYD ROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]OXY}METHYL)-3,4-DIHYDROXYTETRAHYDROFURAN-2- YL]PYRIDINIUM(Non-covalent)

NGD.1: 16 residues within 4Å: Chain A: L.86, W.87, S.88, R.89, L.107, E.108, D.117, W.138, S.148, W.151, S.155, D.181, S.182, T.183, F.184, Q.188 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:W.151, A:W.151, A:W.151 Hydrogen bonds: A:W.87, A:W.87, A:W.87, A:R.89, A:K.91, A:D.117, A:W.138, A:S.155, A:D.181, A:T.183, A:F.184, A:Q.188 Water bridges: A:R.89, A:R.89, A:L.107, A:D.118, A:N.145 Salt bridges: A:R.89 pi-Stacking: A:W.138, A:W.138, A:W.138 pi-Cation interactions: A:W.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Q. et al., Structural basis for formation and hydrolysis of the calcium messenger cyclic ADP-ribose by human CD38. J.Biol.Chem. (2007)

Release Date

2006-12-19

Peptides

ADP-ribosyl cyclase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ADP-ribosyl cyclase 1

Related Entries With Identical Sequence