SMTL ID : 2o3z.4 (3 other biounits)

X-ray crystal structure of LpxC complexed with 3-heptyloxybenzoate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: T.56, H.58, K.227, G.252, H.253 Ligands: AI7.5 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.56, A:H.58, A:S.59, A:H.253 Water bridges: A:K.227 Salt bridges: A:K.227, A:H.253

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: H.74, H.226, D.230 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.74, A:H.226, A:D.230, A:D.230 ZN.3: 2 residues within 4Å: Chain A: H.58, H.188 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.58, A:H.188, H2O.1, H2O.1 ZN.4: 3 residues within 4Å: Chain A: I.27, H.29, E.90 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.29, A:E.90

1 x AI7: 3-(heptyloxy)benzoic acid(Non-covalent)

AI7.5: 12 residues within 4Å: Chain A: I.18, H.58, I.186, I.189, K.190, G.195, G.198, S.199, L.200, T.203, V.205 Ligands: SO4.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.200, A:V.205 Salt bridges: A:K.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shin, H. et al., Amphipathic benzoic acid derivatives: synthesis and binding in the hydrophobic tunnel of the zinc deacetylase LpxC. Bioorg.Med.Chem. (2007)

Release Date

2007-02-27

Peptides

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

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