SMTL ID : 2o8m.1

Crystal structure of the S139A mutant of Hepatitis C Virus NS3/4A protease

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-2-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.108, T.109, C.110, C.156 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.108, A:C.110, A:C.156, H2O.5 ZN.3: 4 residues within 4Å: Chain B: C.108, T.109, C.110, C.156 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.108, B:C.110, B:C.156, H2O.8

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: A.16, A.122 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:A.16, A:A.16 Water bridges: B:R.103 NA.4: 4 residues within 4Å: Chain A: T.15 Chain C: L.13, G.15, K.16 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:T.15, C:G.15 Water bridges: C:G.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prongay, A.J. et al., Discovery of the HCV NS3/4A protease inhibitor (1R,5S)-N-[3-amino-1-(cyclobutylmethyl)-2,3-dioxopropyl]-3- [2(S)-[[[(1,1-dimethylethyl)amino]carbonyl]amino]-3,3-dimethyl-1-oxobutyl]- 6,6-dimethyl-3-azabicyclo[3.1.0]hexan-2(S)-carboxamide (Sch 503034) II. Key steps in structure-based optimization. J.Med.Chem. (2007)

Release Date

2007-10-09

Peptides

Protease: AB
Protease: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Protease

Protease

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