- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.54 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x GN1: 2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucopyranose(Non-covalent)
- 9 x CO: COBALT (II) ION(Non-covalent)
CO.2: 5 residues within 4Å:- Chain A: D.406
- Chain C: D.406
- Chain E: D.406
- Ligands: CO.13, CO.24
3 PLIP interactions:1 interactions with chain A, 1 interactions with chain E, 1 interactions with chain C- Metal complexes: A:D.406, E:D.406, C:D.406
CO.7: 8 residues within 4Å:- Chain B: D.406
- Chain D: D.406
- Chain F: D.406
- Ligands: CO.8, CO.18, CO.19, CO.29, CO.30
3 PLIP interactions:1 interactions with chain D, 1 interactions with chain F, 1 interactions with chain B- Metal complexes: D:D.406, F:D.406, B:D.406
CO.8: 8 residues within 4Å:- Chain B: D.406
- Chain D: D.406
- Chain F: D.406
- Ligands: CO.7, CO.18, CO.19, CO.29, CO.30
5 PLIP interactions:2 interactions with chain D, 1 interactions with chain B, 2 interactions with chain F- Metal complexes: D:D.406, D:D.406, B:D.406, F:D.406, F:D.406
CO.13: 5 residues within 4Å:- Chain A: D.406
- Chain C: D.406
- Chain E: D.406
- Ligands: CO.2, CO.24
3 PLIP interactions:1 interactions with chain A, 1 interactions with chain E, 1 interactions with chain C- Metal complexes: A:D.406, E:D.406, C:D.406
CO.18: 8 residues within 4Å:- Chain B: D.406
- Chain D: D.406
- Chain F: D.406
- Ligands: CO.7, CO.8, CO.19, CO.29, CO.30
3 PLIP interactions:1 interactions with chain F, 1 interactions with chain B, 1 interactions with chain D- Metal complexes: F:D.406, B:D.406, D:D.406
CO.19: 8 residues within 4Å:- Chain B: D.406
- Chain D: D.406
- Chain F: D.406
- Ligands: CO.7, CO.8, CO.18, CO.29, CO.30
5 PLIP interactions:2 interactions with chain F, 2 interactions with chain B, 1 interactions with chain D- Metal complexes: F:D.406, F:D.406, B:D.406, B:D.406, D:D.406
CO.24: 5 residues within 4Å:- Chain A: D.406
- Chain C: D.406
- Chain E: D.406
- Ligands: CO.2, CO.13
3 PLIP interactions:1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain E- Metal complexes: A:D.406, C:D.406, E:D.406
CO.29: 8 residues within 4Å:- Chain B: D.406
- Chain D: D.406
- Chain F: D.406
- Ligands: CO.7, CO.8, CO.18, CO.19, CO.30
3 PLIP interactions:1 interactions with chain F, 1 interactions with chain B, 1 interactions with chain D- Metal complexes: F:D.406, B:D.406, D:D.406
CO.30: 8 residues within 4Å:- Chain B: D.406
- Chain D: D.406
- Chain F: D.406
- Ligands: CO.7, CO.8, CO.18, CO.19, CO.29
5 PLIP interactions:2 interactions with chain F, 1 interactions with chain B, 2 interactions with chain D- Metal complexes: F:D.406, F:D.406, B:D.406, D:D.406, D:D.406
- 6 x DCA: DESULFO-COENZYME A(Non-covalent)
DCA.3: 14 residues within 4Å:- Chain A: G.404, S.405, A.422, A.423, I.438, R.440, P.442
- Chain C: K.446, W.449
- Chain D: P.442
- Chain E: C.385, N.386, Y.387
- Ligands: GN1.1
12 PLIP interactions:8 interactions with chain A, 2 interactions with chain E, 2 interactions with chain C- Hydrophobic interactions: A:A.422, A:A.423, E:Y.387, C:W.449
- Hydrogen bonds: A:S.405, A:A.423, A:R.440, A:R.440, A:R.440, E:Y.387
- Water bridges: A:R.440
- Salt bridges: C:K.446
DCA.10: 18 residues within 4Å:- Chain B: F.402, G.404, S.405, A.422, A.423, I.438, R.440
- Chain C: R.429
- Chain D: C.385, N.386, Y.387, V.410
- Chain E: P.442, T.444
- Chain F: T.444, K.446, W.449
- Ligands: GN1.5
15 PLIP interactions:3 interactions with chain D, 8 interactions with chain B, 1 interactions with chain C, 3 interactions with chain F- Hydrophobic interactions: D:Y.387, D:V.410, B:A.422, B:A.423, F:W.449
- Hydrogen bonds: D:Y.387, B:S.405, B:A.423, B:R.440, B:R.440, B:R.440, B:R.440, F:T.444
- Salt bridges: C:R.429, F:K.446
DCA.14: 14 residues within 4Å:- Chain A: C.385, N.386, Y.387
- Chain C: G.404, S.405, A.422, A.423, I.438, R.440, P.442
- Chain E: K.446, W.449
- Chain F: P.442
- Ligands: GN1.12
12 PLIP interactions:8 interactions with chain C, 2 interactions with chain E, 2 interactions with chain A- Hydrophobic interactions: C:A.422, C:A.423, E:W.449, A:Y.387
- Hydrogen bonds: C:S.405, C:A.423, C:R.440, C:R.440, C:R.440, A:Y.387
- Water bridges: C:R.440
- Salt bridges: E:K.446
DCA.21: 18 residues within 4Å:- Chain A: P.442, T.444
- Chain B: T.444, K.446, W.449
- Chain D: F.402, G.404, S.405, A.422, A.423, I.438, R.440
- Chain E: R.429
- Chain F: C.385, N.386, Y.387, V.410
- Ligands: GN1.16
15 PLIP interactions:1 interactions with chain E, 3 interactions with chain B, 8 interactions with chain D, 3 interactions with chain F- Salt bridges: E:R.429, B:K.446
- Hydrophobic interactions: B:W.449, D:A.422, D:A.423, F:Y.387, F:V.410
- Hydrogen bonds: B:T.444, D:S.405, D:A.423, D:R.440, D:R.440, D:R.440, D:R.440, F:Y.387
DCA.25: 14 residues within 4Å:- Chain A: K.446, W.449
- Chain B: P.442
- Chain C: C.385, N.386, Y.387
- Chain E: G.404, S.405, A.422, A.423, I.438, R.440, P.442
- Ligands: GN1.23
12 PLIP interactions:8 interactions with chain E, 2 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: E:A.422, E:A.423, A:W.449, C:Y.387
- Hydrogen bonds: E:S.405, E:A.423, E:R.440, E:R.440, E:R.440, C:Y.387
- Water bridges: E:R.440
- Salt bridges: A:K.446
DCA.32: 18 residues within 4Å:- Chain A: R.429
- Chain B: C.385, N.386, Y.387, V.410
- Chain C: P.442, T.444
- Chain D: T.444, K.446, W.449
- Chain F: F.402, G.404, S.405, A.422, A.423, I.438, R.440
- Ligands: GN1.27
15 PLIP interactions:3 interactions with chain D, 3 interactions with chain B, 8 interactions with chain F, 1 interactions with chain A- Hydrophobic interactions: D:W.449, B:Y.387, B:V.410, F:A.422, F:A.423
- Hydrogen bonds: D:T.444, B:Y.387, F:S.405, F:A.423, F:R.440, F:R.440, F:R.440, F:R.440
- Salt bridges: D:K.446, A:R.429
- 6 x UD1: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE(Non-covalent)
UD1.4: 20 residues within 4Å:- Chain A: L.11, A.12, A.13, G.14, Q.76, Q.79, L.80, G.81, T.82, A.85, Y.103, D.105, Y.139, G.140, E.154, N.169, T.170, Y.197, I.198, T.199
19 PLIP interactions:19 interactions with chain A- Hydrophobic interactions: A:Y.197, A:T.199
- Hydrogen bonds: A:A.13, A:G.14, A:Q.76, A:Q.76, A:G.81, A:T.82, A:Y.103, A:G.104, A:D.105, A:G.140, A:E.154, A:E.154, A:N.169
- Water bridges: A:D.105, A:D.105, A:E.154, A:E.154
UD1.11: 26 residues within 4Å:- Chain B: L.11, A.12, A.13, G.14, R.18, K.25, Q.76, Q.79, L.80, G.81, T.82, A.85, Y.103, G.104, D.105, Y.139, G.140, E.154, N.169, T.170, Y.197, I.198, T.199, N.227
- Ligands: MG.6, SO4.9
23 PLIP interactions:23 interactions with chain B- Hydrophobic interactions: B:Y.197, B:T.199
- Hydrogen bonds: B:A.13, B:G.14, B:G.14, B:R.18, B:Q.76, B:Q.76, B:G.81, B:T.82, B:G.104, B:D.105, B:G.140, B:E.154, B:E.154, B:N.169, B:N.169, B:T.170, B:N.227
- Water bridges: B:K.25, B:K.25, B:Y.139
- Salt bridges: B:K.25
UD1.15: 20 residues within 4Å:- Chain C: L.11, A.12, A.13, G.14, Q.76, Q.79, L.80, G.81, T.82, A.85, Y.103, D.105, Y.139, G.140, E.154, N.169, T.170, Y.197, I.198, T.199
19 PLIP interactions:19 interactions with chain C- Hydrophobic interactions: C:Y.197, C:T.199
- Hydrogen bonds: C:A.13, C:G.14, C:Q.76, C:Q.76, C:G.81, C:T.82, C:Y.103, C:G.104, C:D.105, C:G.140, C:E.154, C:E.154, C:N.169
- Water bridges: C:D.105, C:D.105, C:E.154, C:E.154
UD1.22: 26 residues within 4Å:- Chain D: L.11, A.12, A.13, G.14, R.18, K.25, Q.76, Q.79, L.80, G.81, T.82, A.85, Y.103, G.104, D.105, Y.139, G.140, E.154, N.169, T.170, Y.197, I.198, T.199, N.227
- Ligands: MG.17, SO4.20
23 PLIP interactions:23 interactions with chain D- Hydrophobic interactions: D:Y.197, D:T.199
- Hydrogen bonds: D:A.13, D:G.14, D:G.14, D:R.18, D:Q.76, D:Q.76, D:G.81, D:T.82, D:G.104, D:D.105, D:G.140, D:E.154, D:E.154, D:N.169, D:N.169, D:T.170, D:N.227
- Water bridges: D:K.25, D:K.25, D:Y.139
- Salt bridges: D:K.25
UD1.26: 20 residues within 4Å:- Chain E: L.11, A.12, A.13, G.14, Q.76, Q.79, L.80, G.81, T.82, A.85, Y.103, D.105, Y.139, G.140, E.154, N.169, T.170, Y.197, I.198, T.199
18 PLIP interactions:18 interactions with chain E- Hydrophobic interactions: E:Y.197, E:T.199
- Hydrogen bonds: E:A.13, E:G.14, E:Q.76, E:Q.76, E:G.81, E:T.82, E:Y.103, E:D.105, E:G.140, E:E.154, E:E.154, E:N.169
- Water bridges: E:D.105, E:D.105, E:E.154, E:E.154
UD1.33: 26 residues within 4Å:- Chain F: L.11, A.12, A.13, G.14, R.18, K.25, Q.76, Q.79, L.80, G.81, T.82, A.85, Y.103, G.104, D.105, Y.139, G.140, E.154, N.169, T.170, Y.197, I.198, T.199, N.227
- Ligands: MG.28, SO4.31
24 PLIP interactions:24 interactions with chain F- Hydrophobic interactions: F:Y.197, F:T.199
- Hydrogen bonds: F:A.13, F:G.14, F:G.14, F:R.18, F:Q.76, F:Q.76, F:G.81, F:T.82, F:G.104, F:D.105, F:G.140, F:E.154, F:E.154, F:N.169, F:N.169, F:T.170, F:N.227
- Water bridges: F:K.25, F:K.25, F:D.105, F:Y.139
- Salt bridges: F:K.25
- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.6: 4 residues within 4Å:- Chain B: K.25, D.105, N.227
- Ligands: UD1.11
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.105, H2O.4, H2O.5
MG.17: 4 residues within 4Å:- Chain D: K.25, D.105, N.227
- Ligands: UD1.22
3 PLIP interactions:1 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.105, H2O.11, H2O.12
MG.28: 4 residues within 4Å:- Chain F: K.25, D.105, N.227
- Ligands: UD1.33
3 PLIP interactions:1 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: F:D.105, H2O.18, H2O.19
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.9: 5 residues within 4Å:- Chain B: K.15, G.16, T.17, R.18
- Ligands: UD1.11
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:T.17, B:T.17, B:R.18
- Water bridges: B:K.25, B:K.25
- Salt bridges: B:R.18
SO4.20: 5 residues within 4Å:- Chain D: K.15, G.16, T.17, R.18
- Ligands: UD1.22
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:T.17, D:T.17, D:R.18
- Water bridges: D:K.25, D:K.25
- Salt bridges: D:R.18
SO4.31: 5 residues within 4Å:- Chain F: K.15, G.16, T.17, R.18
- Ligands: UD1.33
6 PLIP interactions:6 interactions with chain F- Hydrogen bonds: F:T.17, F:T.17, F:R.18
- Water bridges: F:K.25, F:K.25
- Salt bridges: F:R.18
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Olsen, L.R. et al., Structure of the E. coli bifunctional GlmU acetyltransferase active site with substrates and products. Protein Sci. (2007)
- Release Date
- 2007-06-19
- Peptides
- Bifunctional protein glmU: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.54 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x GN1: 2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucopyranose(Non-covalent)
- 9 x CO: COBALT (II) ION(Non-covalent)
- 6 x DCA: DESULFO-COENZYME A(Non-covalent)
- 6 x UD1: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Olsen, L.R. et al., Structure of the E. coli bifunctional GlmU acetyltransferase active site with substrates and products. Protein Sci. (2007)
- Release Date
- 2007-06-19
- Peptides
- Bifunctional protein glmU: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B