SMTL ID : 2ok9.1

PrTX-I-BPB

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

homo-dimer

Ligands

2 x PBP: p-Bromophenacyl bromide(Covalent)

PBP.1: 9 residues within 4Å: Chain A: Y.21, G.22, C.28, G.29, C.44, H.47, K.48, V.92 Ligands: IPA.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:H.47, A:K.48 pi-Cation interactions: A:K.48 PBP.3: 12 residues within 4Å: Chain B: Y.21, G.22, C.28, G.29, V.30, C.44, H.47, K.48, Y.51, K.60, V.92 Ligands: IPA.4 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:H.47, B:K.48, B:Y.51 pi-Cation interactions: B:K.48

2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.2: 8 residues within 4Å: Chain A: L.2, G.6, I.9, P.17, A.18, Y.21, G.22 Ligands: PBP.1 No protein-ligand interaction detected (PLIP) IPA.4: 6 residues within 4Å: Chain B: G.6, P.17, A.18, Y.21, G.22 Ligands: PBP.3 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:P.17, B:A.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marchi-Salvador, D.P. et al., Crystal structure of a phospholipase A(2) homolog complexed with p-bromophenacyl bromide reveals important structural changes associated with the inhibition of myotoxic activity. Biochim.Biophys.Acta (2009)

Release Date

2008-09-23

Peptides

Phospholipase A2 homolog 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phospholipase A2 homolog 1

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