SMTL ID : 2okc.1 (1 other biounit)

Crystal structure of Type I restriction enzyme StySJI M protein (NP_813429.1) from Bacteroides thetaiotaomicron VPI-5482 at 2.20 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 25 residues within 4Å: Chain A: Q.152, Y.153, F.154, T.155, R.157, I.160, P.178, A.179, C.180, G.181, T.182, G.183, G.184, F.185, D.215, N.216, T.217, V.220, E.243, D.244, S.245, N.260, P.262, R.266, F.289 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:Y.153, A:T.155, A:T.155, A:G.181, A:T.182, A:G.183, A:G.184, A:N.216, A:N.216, A:T.217, A:D.244, A:S.245, A:R.266 Water bridges: A:F.185, A:N.260, A:N.260 Salt bridges: A:R.157 pi-Stacking: A:F.289

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: H.332, Y.393, R.396 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.393

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.3: 8 residues within 4Å: Chain A: L.139, N.142, G.143, A.150, Y.153, F.154, T.182, L.223 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.150, A:Y.153, A:F.154, A:T.182, A:L.223 Hydrogen bonds: A:L.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Type I restriction enzyme StySJI M protein (NP_813429.1) from Bacteroides thetaiotaomicron VPI-5482 at 2.20 A resolution. To be Published

Release Date

2007-01-30

Peptides

Type I restriction enzyme StySJI M protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Type I restriction enzyme StySJI M protein

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