SMTL ID : 2onj.1

Structure of the multidrug ABC transporter Sav1866 from S. aureus in complex with AMP-PNP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

homo-dimer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 7 residues within 4Å: Chain A: G.367, E.368, T.369, S.524, K.525, R.527, T.529 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.369, A:R.527, A:T.529, A:T.529 NA.2: 5 residues within 4Å: Chain A: S.381, Q.422, D.502, E.503 Ligands: ANP.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.381 NA.4: 5 residues within 4Å: Chain B: S.381, Q.422, D.502, E.503 Ligands: ANP.6 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.381, B:Q.422 Water bridges: A:G.480 NA.5: 7 residues within 4Å: Chain B: G.367, E.368, T.369, S.524, K.525, R.527, T.529 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.524, B:R.527

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.3: 22 residues within 4Å: Chain A: A.113, Y.349, I.356, M.375, S.376, G.377, G.378, G.379, K.380, S.381, T.382, Y.391, Q.422, E.503, H.534 Chain B: V.476, K.477, S.479, G.480, G.481, A.507 Ligands: NA.2 18 PLIP interactions: 5 interactions with chain B, 13 interactions with chain A Hydrogen bonds: B:S.479, B:S.479, B:G.480, B:G.481, B:A.507, A:G.377, A:G.378, A:G.379, A:G.379, A:K.380, A:K.380, A:S.381, A:S.381, A:T.382, A:Q.422, A:H.534 pi-Stacking: A:Y.349, A:Y.349 ANP.6: 21 residues within 4Å: Chain A: V.476, K.477, S.479, G.480, G.481, A.507 Chain B: Y.349, I.356, M.375, S.376, G.377, G.378, G.379, K.380, S.381, T.382, Y.391, Q.422, E.503, H.534 Ligands: NA.4 19 PLIP interactions: 14 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:G.377, B:G.377, B:G.378, B:G.379, B:K.380, B:K.380, B:S.381, B:S.381, B:S.381, B:T.382, B:Q.422, B:H.534, A:S.479, A:S.479, A:G.480, A:G.481, A:A.507 pi-Stacking: B:Y.349, B:Y.349

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dawson, R.J.P. et al., Structure of the multidrug ABC transporter Sav1866 from Staphylococcus aureus in complex with AMP-PNP. Febs Lett. (2007)

Release Date

2007-03-13

Peptides

Multidrug export ATP-binding/permease protein SAV1866: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Multidrug export ATP-binding/permease protein SAV1866

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