SMTL ID : 2oog.1 (5 other biounits)

Crystal structure of glycerophosphoryl diester phosphodiesterase from Staphylococcus aureus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: E.57, D.59, E.139 Ligands: GOL.5 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.57, A:D.59, A:E.139, H2O.4, H2O.6

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: H.187, R.216, S.217, A.219, I.220 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.219 Water bridges: A:R.216, A:R.216 Salt bridges: A:H.187, A:R.216 SO4.3: 4 residues within 4Å: Chain A: S.142, S.179, D.180, E.181 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.179, A:D.180, A:D.180, A:E.181 SO4.4: 2 residues within 4Å: Chain A: H.161, N.164 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.164, A:N.164 Salt bridges: A:H.161

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 9 residues within 4Å: Chain A: H.29, E.57, E.139, Q.176, F.178, L.198, Y.247, F.267 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.29, A:Q.176, A:Q.176 Water bridges: A:R.30 GOL.6: 4 residues within 4Å: Chain A: F.41, Q.42, D.45, R.129 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.45, A:D.45, A:R.129 Water bridges: A:Q.42 GOL.7: 4 residues within 4Å: Chain A: D.124, E.128, K.159 Ligands: GOL.10 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.159, A:K.159 Water bridges: A:D.124, A:E.128 GOL.8: 3 residues within 4Å: Chain A: K.46, R.112 Ligands: GOL.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.46, A:R.112 GOL.9: 4 residues within 4Å: Chain A: K.46, E.50, R.112 Ligands: GOL.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.50, A:E.50, A:R.112 GOL.10: 3 residues within 4Å: Chain A: K.159, H.161 Ligands: GOL.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase from Staphylococcus Aureus. To be Published

Release Date

2007-02-06

Peptides

Glycerophosphoryl diester phosphodiesterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycerophosphoryl diester phosphodiesterase

Related Entries With Identical Sequence