SMTL ID : 2oyo.1

Crystal structure of Uncharacterized peroxidase-related protein (YP_604910.1) from Deinococcus geothermalis DSM 11300 at 1.51 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

homo-hexamer

Ligands

9 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 4 residues within 4Å: Chain A: G.71, Y.72, L.73, T.74 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.74 Water bridges: A:G.71 MPD.2: 9 residues within 4Å: Chain A: Q.110, K.111, H.121, A.122 Chain D: L.92, V.186, P.187, P.189, Y.192 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain D Hydrophobic interactions: A:Q.110, D:L.92, D:Y.192 Hydrogen bonds: D:Y.192 MPD.3: 2 residues within 4Å: Chain B: E.70, Y.72 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Y.72, B:Y.72 Hydrogen bonds: B:E.70 MPD.4: 4 residues within 4Å: Chain C: G.71, Y.72, L.73, T.74 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:T.74 Water bridges: C:G.71 MPD.5: 9 residues within 4Å: Chain C: Q.110, K.111, H.121, A.122 Chain F: L.92, V.186, P.187, P.189, Y.192 4 PLIP interactions: 3 interactions with chain F, 1 interactions with chain C Hydrophobic interactions: F:L.92, F:Y.192, C:Q.110 Hydrogen bonds: F:Y.192 MPD.6: 2 residues within 4Å: Chain D: E.70, Y.72 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:Y.72, D:Y.72 Hydrogen bonds: D:E.70 MPD.7: 4 residues within 4Å: Chain E: G.71, Y.72, L.73, T.74 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:T.74 Water bridges: E:G.71 MPD.8: 9 residues within 4Å: Chain B: L.92, V.186, P.187, P.189, Y.192 Chain E: Q.110, K.111, H.121, A.122 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain E Hydrophobic interactions: B:L.92, B:Y.192, E:Q.110 Hydrogen bonds: B:Y.192 MPD.9: 2 residues within 4Å: Chain F: E.70, Y.72 3 PLIP interactions: 3 interactions with chain F Hydrophobic interactions: F:Y.72, F:Y.72 Hydrogen bonds: F:E.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Uncharacterized peroxidase-related protein (YP_604910.1) from Deinococcus geothermalis DSM 11300 at 1.51 A resolution. To be published

Release Date

2007-03-20

Peptides

Uncharacterized peroxidase-related protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Uncharacterized peroxidase-related protein