SMTL ID : 2ozg.1 (1 other biounit)

Crystal structure of GCN5-related N-acetyltransferase (YP_325469.1) from Anabaena variabilis ATCC 29413 at 2.00 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 4 residues within 4Å: Chain A: M.68, R.76, P.78, I.113 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.113 Salt bridges: A:R.76 ACT.7: 4 residues within 4Å: Chain B: M.68, R.76, P.78, I.113 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:I.113 Salt bridges: B:R.76 ACT.13: 4 residues within 4Å: Chain C: M.68, R.76, P.78, I.113 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:I.113 Salt bridges: C:R.76 ACT.19: 4 residues within 4Å: Chain D: M.68, R.76, P.78, I.113 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:I.113 Salt bridges: D:R.76 ACT.25: 4 residues within 4Å: Chain E: M.68, R.76, P.78, I.113 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:I.113 Salt bridges: E:R.76 ACT.31: 4 residues within 4Å: Chain F: M.68, R.76, P.78, I.113 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:I.113 Salt bridges: F:R.76

6 x COA: COENZYME A(Non-covalent)

COA.2: 25 residues within 4Å: Chain A: C.30, F.31, A.84, V.85, G.86, I.87, R.92, G.93, D.94, G.95, A.96, A.97, I.98, Y.119, A.121, T.122, R.124, L.125, Y.126, K.128 Chain B: N.251, R.253, S.254, Q.255 Chain D: E.275 24 PLIP interactions: 18 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:F.31, A:I.87, A:A.97, A:A.121 Hydrogen bonds: A:I.87, A:I.87, A:R.92, A:G.93, A:D.94, A:G.95, A:A.96, A:A.97, A:I.98, B:R.253, B:S.254, B:S.254, B:S.254, B:Q.255 Water bridges: A:Y.91, A:G.93, A:K.128, A:K.128 Salt bridges: A:K.128 pi-Cation interactions: B:R.253 COA.8: 25 residues within 4Å: Chain B: C.30, F.31, A.84, V.85, G.86, I.87, R.92, G.93, D.94, G.95, A.96, A.97, I.98, Y.119, A.121, T.122, R.124, L.125, Y.126, K.128 Chain C: N.251, R.253, S.254, Q.255 Chain F: E.275 24 PLIP interactions: 18 interactions with chain B, 6 interactions with chain C Hydrophobic interactions: B:F.31, B:I.87, B:A.97, B:A.121 Hydrogen bonds: B:I.87, B:I.87, B:R.92, B:G.93, B:D.94, B:G.95, B:A.96, B:A.97, B:I.98, C:R.253, C:S.254, C:S.254, C:S.254, C:Q.255 Water bridges: B:Y.91, B:G.93, B:K.128, B:K.128 Salt bridges: B:K.128 pi-Cation interactions: C:R.253 COA.14: 25 residues within 4Å: Chain A: N.251, R.253, S.254, Q.255 Chain C: C.30, F.31, A.84, V.85, G.86, I.87, R.92, G.93, D.94, G.95, A.96, A.97, I.98, Y.119, A.121, T.122, R.124, L.125, Y.126, K.128 Chain E: E.275 24 PLIP interactions: 18 interactions with chain C, 6 interactions with chain A Hydrophobic interactions: C:F.31, C:I.87, C:A.97, C:A.121 Hydrogen bonds: C:I.87, C:I.87, C:R.92, C:G.93, C:D.94, C:G.95, C:A.96, C:A.97, C:I.98, A:R.253, A:S.254, A:S.254, A:S.254, A:Q.255 Water bridges: C:Y.91, C:G.93, C:K.128, C:K.128 Salt bridges: C:K.128 pi-Cation interactions: A:R.253 COA.20: 25 residues within 4Å: Chain A: E.275 Chain D: C.30, F.31, A.84, V.85, G.86, I.87, R.92, G.93, D.94, G.95, A.96, A.97, I.98, Y.119, A.121, T.122, R.124, L.125, Y.126, K.128 Chain E: N.251, R.253, S.254, Q.255 25 PLIP interactions: 19 interactions with chain D, 6 interactions with chain E Hydrophobic interactions: D:F.31, D:I.87, D:A.97, D:A.121 Hydrogen bonds: D:I.87, D:I.87, D:R.92, D:G.93, D:D.94, D:G.95, D:A.96, D:A.97, D:I.98, D:T.122, E:R.253, E:S.254, E:S.254, E:S.254, E:Q.255 Water bridges: D:Y.91, D:G.93, D:K.128, D:K.128 Salt bridges: D:K.128 pi-Cation interactions: E:R.253 COA.26: 25 residues within 4Å: Chain C: E.275 Chain E: C.30, F.31, A.84, V.85, G.86, I.87, R.92, G.93, D.94, G.95, A.96, A.97, I.98, Y.119, A.121, T.122, R.124, L.125, Y.126, K.128 Chain F: N.251, R.253, S.254, Q.255 25 PLIP interactions: 19 interactions with chain E, 6 interactions with chain F Hydrophobic interactions: E:F.31, E:I.87, E:A.97, E:A.121 Hydrogen bonds: E:I.87, E:I.87, E:R.92, E:G.93, E:D.94, E:G.95, E:A.96, E:A.97, E:I.98, E:T.122, F:R.253, F:S.254, F:S.254, F:S.254, F:Q.255 Water bridges: E:Y.91, E:G.93, E:K.128, E:K.128 Salt bridges: E:K.128 pi-Cation interactions: F:R.253 COA.32: 25 residues within 4Å: Chain B: E.275 Chain D: N.251, R.253, S.254, Q.255 Chain F: C.30, F.31, A.84, V.85, G.86, I.87, R.92, G.93, D.94, G.95, A.96, A.97, I.98, Y.119, A.121, T.122, R.124, L.125, Y.126, K.128 25 PLIP interactions: 19 interactions with chain F, 6 interactions with chain D Hydrophobic interactions: F:F.31, F:I.87, F:A.97, F:A.121 Hydrogen bonds: F:I.87, F:I.87, F:R.92, F:G.93, F:D.94, F:G.95, F:A.96, F:A.97, F:I.98, F:T.122, D:R.253, D:S.254, D:S.254, D:S.254, D:Q.255 Water bridges: F:Y.91, F:G.93, F:K.128, F:K.128 Salt bridges: F:K.128 pi-Cation interactions: D:R.253

24 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 7 residues within 4Å: Chain A: G.73, H.179, Y.302, P.303, A.386, G.387, E.388 Ligand excluded by PLIP PEG.4: 8 residues within 4Å: Chain A: Q.75, E.298, A.299, R.300, Y.302, G.333, K.334, S.335 Ligand excluded by PLIP PEG.5: 6 residues within 4Å: Chain A: L.161, K.162, N.163, N.164, H.168, W.189 Ligand excluded by PLIP PEG.6: 5 residues within 4Å: Chain A: S.329, A.331, K.334, S.335, E.336 Ligand excluded by PLIP PEG.9: 7 residues within 4Å: Chain B: G.73, H.179, Y.302, P.303, A.386, G.387, E.388 Ligand excluded by PLIP PEG.10: 8 residues within 4Å: Chain B: Q.75, E.298, A.299, R.300, Y.302, G.333, K.334, S.335 Ligand excluded by PLIP PEG.11: 6 residues within 4Å: Chain B: L.161, K.162, N.163, N.164, H.168, W.189 Ligand excluded by PLIP PEG.12: 5 residues within 4Å: Chain B: S.329, A.331, K.334, S.335, E.336 Ligand excluded by PLIP PEG.15: 7 residues within 4Å: Chain C: G.73, H.179, Y.302, P.303, A.386, G.387, E.388 Ligand excluded by PLIP PEG.16: 8 residues within 4Å: Chain C: Q.75, E.298, A.299, R.300, Y.302, G.333, K.334, S.335 Ligand excluded by PLIP PEG.17: 6 residues within 4Å: Chain C: L.161, K.162, N.163, N.164, H.168, W.189 Ligand excluded by PLIP PEG.18: 5 residues within 4Å: Chain C: S.329, A.331, K.334, S.335, E.336 Ligand excluded by PLIP PEG.21: 7 residues within 4Å: Chain D: G.73, H.179, Y.302, P.303, A.386, G.387, E.388 Ligand excluded by PLIP PEG.22: 8 residues within 4Å: Chain D: Q.75, E.298, A.299, R.300, Y.302, G.333, K.334, S.335 Ligand excluded by PLIP PEG.23: 6 residues within 4Å: Chain D: L.161, K.162, N.163, N.164, H.168, W.189 Ligand excluded by PLIP PEG.24: 5 residues within 4Å: Chain D: S.329, A.331, K.334, S.335, E.336 Ligand excluded by PLIP PEG.27: 7 residues within 4Å: Chain E: G.73, H.179, Y.302, P.303, A.386, G.387, E.388 Ligand excluded by PLIP PEG.28: 8 residues within 4Å: Chain E: Q.75, E.298, A.299, R.300, Y.302, G.333, K.334, S.335 Ligand excluded by PLIP PEG.29: 6 residues within 4Å: Chain E: L.161, K.162, N.163, N.164, H.168, W.189 Ligand excluded by PLIP PEG.30: 5 residues within 4Å: Chain E: S.329, A.331, K.334, S.335, E.336 Ligand excluded by PLIP PEG.33: 7 residues within 4Å: Chain F: G.73, H.179, Y.302, P.303, A.386, G.387, E.388 Ligand excluded by PLIP PEG.34: 8 residues within 4Å: Chain F: Q.75, E.298, A.299, R.300, Y.302, G.333, K.334, S.335 Ligand excluded by PLIP PEG.35: 6 residues within 4Å: Chain F: L.161, K.162, N.163, N.164, H.168, W.189 Ligand excluded by PLIP PEG.36: 5 residues within 4Å: Chain F: S.329, A.331, K.334, S.335, E.336 Ligand excluded by PLIP

Links

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Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of GCN5-related N-acetyltransferase (YP_325469.1) from Anabaena variabilis ATCC 29413 at 2.00 A resolution. To be published

Release Date

2007-03-13

Peptides

GCN5-related N-acetyltransferase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

GCN5-related N-acetyltransferase

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