SMTL ID : 2p09.1

Structural Insights into the Evolution of a Non-Biological Protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.25, C.28, C.48, C.51 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.25, A:C.28, A:C.48, A:C.51 ZN.5: 4 residues within 4Å: Chain B: C.25, C.28, C.48, C.51 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.25, B:C.28, B:C.48, B:C.51

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 7 residues within 4Å: Chain A: K.12, W.69, L.70 Chain B: K.12, W.69, L.70 Ligands: CL.6 Ligand excluded by PLIP CL.6: 7 residues within 4Å: Chain A: K.12, W.69, L.70 Chain B: K.12, W.69, L.70 Ligands: CL.2 Ligand excluded by PLIP

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.3: 13 residues within 4Å: Chain A: D.34, K.36, K.38, R.43, Y.45, N.46, M.47, C.48, F.52, Y.63, H.64, G.65, H.66 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:Y.45, A:N.46, A:M.47, A:M.47, A:G.65, A:H.66 Water bridges: A:K.36, A:K.36, A:R.43 Salt bridges: A:K.36, A:K.36, A:K.36, A:K.38, A:K.38, A:R.43, A:R.43 pi-Stacking: A:Y.45, A:F.52 ATP.7: 13 residues within 4Å: Chain B: D.34, K.36, K.38, R.43, Y.45, N.46, M.47, C.48, F.52, Y.63, H.64, G.65, H.66 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:N.46, B:M.47, B:M.47, B:G.65, B:H.66 Water bridges: B:D.34, B:K.36, B:K.36, B:R.43, B:H.64 Salt bridges: B:K.36, B:K.36, B:K.36, B:K.38, B:K.38, B:R.43, B:R.43 pi-Stacking: B:Y.45, B:F.52

2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.4: 6 residues within 4Å: Chain A: L.16, K.17, Y.20, W.35, V.37, L.42 No protein-ligand interaction detected (PLIP) 1PE.8: 6 residues within 4Å: Chain B: L.16, K.17, Y.20, W.35, V.37, L.42 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, M.D. et al., Structural insights into the evolution of a non-biological protein: importance of surface residues in protein fold optimization. PLoS ONE (2007)

Release Date

2007-06-05

Peptides

a non-biological ATP binding protein with two mutations N32D and D65V: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

a non-biological ATP binding protein with two mutations N32D and D65V

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