SMTL ID : 2p1r.2 (1 other biounit)

Crystal structure of Salmonella typhimurium YegS, a putative lipid kinase homologous to eukaryotic sphingosine and diacylglycerol kinases.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 6 residues within 4Å: Chain A: D.67, I.70, N.97, D.98, F.99, A.100 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.97, A:F.99, A:A.100

5 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.125, N.200, L.215, I.216, D.218, L.220 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.125, A:L.215, A:D.218, A:L.220 CA.3: 4 residues within 4Å: Chain A: S.242, D.243, N.245, I.248 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:S.242, A:N.245, A:I.248 CA.4: 6 residues within 4Å: Chain B: D.125, N.200, L.215, I.216, D.218, L.220 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:L.215, B:L.220 CA.5: 4 residues within 4Å: Chain B: S.242, D.243, N.245, I.248 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:S.242, B:D.243, B:N.245, B:I.248 CA.6: 2 residues within 4Å: Chain B: R.81, G.83 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:R.81

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 2 residues within 4Å: Chain B: G.66, T.69 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nichols, C.E. et al., Characterization of Salmonella typhimurium YegS, a putative lipid kinase homologous to eukaryotic sphingosine and diacylglycerol kinases. Proteins: Struct.,Funct.,Genet. (2007)

Release Date

2007-10-23

Peptides

Lipid kinase yegS: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Lipid kinase yegS

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