SMTL ID : 2p3b.1

Crystal Structure of the subtype B wild type HIV protease complexed with TL-3 inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

1 x 3TL: benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate(Non-covalent)

3TL.1: 26 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, D.30, V.32, M.46, I.47, G.48, G.49, I.50, P.81, I.84 Chain B: R.8, L.23, D.25, G.27, D.29, V.32, M.46, I.47, G.48, G.49, I.50, V.82, I.84 26 PLIP interactions: 14 interactions with chain B, 12 interactions with chain A Hydrophobic interactions: B:L.23, B:V.32, B:I.50, B:V.82, B:I.84, A:V.32, A:I.50, A:P.81, A:I.84 Hydrogen bonds: B:R.8, B:D.25, B:G.27, B:D.29, B:D.29, B:G.48, B:G.48, A:D.25, A:G.27, A:D.29, A:D.29, A:D.29, A:G.48, A:G.48 Water bridges: B:I.50, A:I.50 pi-Stacking: B:F.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sanches, M. et al., Structural Characterization of B and non-B Subtypes of HIV-Protease: Insights into the Natural Susceptibility to Drug Resistance Development. J.Mol.Biol. (2007)

Release Date

2007-04-24

Peptides

protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

protease

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