SMTL ID : 2p53.1

Crystal structure of N-acetyl-D-glucosamine-6-phosphate deacetylase D273N mutant complexed with N-acetyl phosphonamidate-d-glucosamine-6-phosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: Q.59, E.131, H.195, H.216 Ligands: NNG.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.131, A:E.131, A:H.195, A:H.216 ZN.3: 5 residues within 4Å: Chain B: Q.59, E.131, H.195, H.216 Ligands: NNG.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.131, B:E.131, B:H.195, B:H.216

2 x NNG: 2-deoxy-2-{[(S)-hydroxy(methyl)phosphoryl]amino}-6-O-phosphono-alpha-D-glucopyranose(Non-covalent)

NNG.2: 19 residues within 4Å: Chain A: Q.59, N.61, E.131, G.141, T.142, H.143, H.195, H.216, N.219, A.220, H.251, N.273, F.287, T.305, L.306, S.307, G.308 Chain B: R.227 Ligands: ZN.1 13 PLIP interactions: 2 interactions with chain B, 11 interactions with chain A Water bridges: B:R.227, A:N.61, A:K.139, A:L.306 Salt bridges: B:R.227, A:H.251 Hydrogen bonds: A:Q.59, A:T.142, A:N.219, A:A.220, A:N.273, A:G.308, A:G.308 NNG.4: 19 residues within 4Å: Chain A: R.227 Chain B: Q.59, N.61, E.131, G.141, T.142, H.143, H.195, H.216, N.219, A.220, H.251, N.273, F.287, T.305, L.306, S.307, G.308 Ligands: ZN.3 12 PLIP interactions: 10 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:T.142, B:N.219, B:A.220, B:N.273, B:G.308, B:G.308 Water bridges: B:Q.59, B:M.221, B:M.221, A:R.227 Salt bridges: B:H.251, A:R.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hall, R.S. et al., Structural Diversity within the Mononuclear and Binuclear Active Sites of N-Acetyl-d-glucosamine-6-phosphate Deacetylase. Biochemistry (2007)

Release Date

2007-07-24

Peptides

N-acetylglucosamine-6-phosphate deacetylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

N-acetylglucosamine-6-phosphate deacetylase