SMTL ID : 2p8z.1

Fitted structure of ADPR-eEF2 in the 80S:ADPR-eEF2:GDPNP:sordarin cryo-EM reconstruction

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Covalent)

APR.1: 4 residues within 4Å: Chain A: H.694, D.696, I.698, H.699 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.694, A:D.696

1 x SO1: [1R-(1.ALPHA.,3A.BETA.,4.BETA.,4A.BETA.,7.BETA.,7A.ALPHA.,8A.BETA.)]8A-[(6-DEOXY-4-O-METHYL-BETA-D-ALTROPYRANOSYLOXY)METHYL]-4-FORMYL-4,4A,5,6,7,7A,8,8A-OCTAHYDRO-7-METHYL-3-(1-METHYLETHYL)-1,4-METHANO-S-INDACENE-3A(1H)-CARBOXYLIC ACID(Non-covalent)

SO1.2: 9 residues within 4Å: Chain A: Q.490, Y.521, E.524, P.559, V.561, A.562, V.797, F.798, W.801 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:P.559, A:P.559, A:F.798, A:F.798, A:W.801 Hydrogen bonds: A:Q.490, A:E.524, A:A.562, A:F.798

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Covalent)

GNP.3: 17 residues within 4Å: Chain A: H.27, V.28, D.29, H.30, G.31, K.32, S.33, T.34, K.159, D.161, S.213, G.214, L.215, H.216 Chain B: Y.13, I.27, T.28 16 PLIP interactions: 14 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.29, A:D.29, A:H.30, A:K.32, A:S.33, A:T.34, A:K.159, A:L.215, A:H.216, A:H.216, B:Y.13, B:T.28 Salt bridges: A:K.159, A:D.161 pi-Stacking: A:H.216 pi-Cation interactions: A:H.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taylor, D.J. et al., Structures of modified eEF2.80S ribosome complexes reveal the role of GTP hydrolysis in translocation. Embo J. (2007)

Release Date

2007-05-08

Peptides

Elongation factor 2: A
Elongation factor Tu-B: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
T

B
S

Elongation factor 2

Elongation factor Tu-B

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