SMTL ID : 2p95.1

Factor xa in complex with the inhibitor 5-chloro-N-((1R,2S)-2-(4-(2-oxopyridin-1(2H)-YL)benzamido) cyclopentyl)thiophene-2-carboxamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ME5: 5-CHLORO-N-((1R,2S)-2-(4-(2-OXOPYRIDIN-1(2H)-YL)BENZAMIDO) CYCLOPENTYL)THIOPHENE-2-CARBOXAMIDE(Non-covalent)

ME5.1: 18 residues within 4Å: Chain A: K.82, E.83, T.84, Y.85, F.162, D.179, A.180, C.181, Q.182, S.185, V.203, W.205, G.206, G.208, C.209, G.216, I.217, Y.218 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.85, A:F.162, A:Q.182, A:W.205, A:W.205 Hydrogen bonds: A:G.206, A:G.208 Water bridges: A:G.208 pi-Stacking: A:Y.85, A:Y.85, A:F.162, A:W.205, A:W.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiao, J.X. et al., SAR and X-ray structures of enantiopure 1,2-cis-(1R,2S)-cyclopentyldiamine and cyclohexyldiamine derivatives as inhibitors of coagulation Factor Xa. Bioorg.Med.Chem.Lett. (2007)

Release Date

2007-07-24

Peptides

Factor Xa: A
Factor Xa: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
L

Factor Xa

Factor Xa

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