SMTL ID : 2pll.3 (2 other biounits)

Crystal structure of perdeuterated human arginase I

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-trimer

Ligands

6 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: D.124, H.126, D.232, D.234 Ligands: MN.2, ABH.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.124, A:H.126, A:D.232, A:D.234, A:D.234 MN.2: 6 residues within 4Å: Chain A: H.101, D.124, D.128, D.232 Ligands: MN.1, ABH.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.101, A:D.124, A:D.128, A:D.232 MN.4: 6 residues within 4Å: Chain B: D.124, H.126, D.232, D.234 Ligands: MN.5, ABH.6 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.124, B:H.126, B:D.232, B:D.234, B:D.234 MN.5: 6 residues within 4Å: Chain B: H.101, D.124, D.128, D.232 Ligands: MN.4, ABH.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.101, B:D.124, B:D.128, B:D.232 MN.7: 6 residues within 4Å: Chain C: D.124, H.126, D.232, D.234 Ligands: MN.8, ABH.9 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.124, C:H.126, C:D.232, C:D.234, C:D.234 MN.8: 6 residues within 4Å: Chain C: H.101, D.124, D.128, D.232 Ligands: MN.7, ABH.9 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.101, C:D.124, C:D.128, C:D.232

3 x ABH: 2(S)-AMINO-6-BORONOHEXANOIC ACID(Non-covalent)

ABH.3: 15 residues within 4Å: Chain A: H.101, D.124, H.126, D.128, N.130, S.137, H.141, G.142, D.183, E.186, D.232, D.234, E.277 Ligands: MN.1, MN.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:H.126 Hydrogen bonds: A:N.130, A:S.137, A:H.141, A:H.141, A:G.142, A:D.183 Water bridges: A:S.137, A:N.139, A:N.139, A:T.246 ABH.6: 15 residues within 4Å: Chain B: H.101, D.124, H.126, D.128, N.130, S.137, H.141, G.142, D.183, E.186, D.232, D.234, E.277 Ligands: MN.4, MN.5 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:H.126 Hydrogen bonds: B:N.130, B:S.137, B:H.141, B:H.141, B:G.142, B:D.183 Water bridges: B:S.137, B:N.139, B:N.139, B:T.246 ABH.9: 15 residues within 4Å: Chain C: H.101, D.124, H.126, D.128, N.130, S.137, H.141, G.142, D.183, E.186, D.232, D.234, E.277 Ligands: MN.7, MN.8 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:H.126 Hydrogen bonds: C:N.130, C:S.137, C:H.141, C:H.141, C:G.142, C:D.183 Water bridges: C:S.137, C:N.139, C:N.139, C:T.246

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Di Costanzo, L. et al., Expression, purification, assay, and crystal structure of perdeuterated human arginase I. Arch.Biochem.Biophys. (2007)

Release Date

2007-08-14

Peptides

arginase-1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

arginase-1

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