SMTL ID : 2pmz.2 (1 other biounit)

Archaeal RNA polymerase from Sulfolobus solfataricus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 8 residues within 4Å: Chain A: C.58, P.59, C.61, N.63, C.68, P.69, H.71 Chain C: Y.1070 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.68, A:H.71 ZN.3: 4 residues within 4Å: Chain C: C.1061, C.1064, C.1079, I.1081 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:C.1061, C:C.1064 ZN.5: 5 residues within 4Å: Chain J: C.7, T.9, C.10, C.44, C.45 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.7, J:C.44, J:C.44, J:C.45 ZN.6: 5 residues within 4Å: Chain K: C.9, T.12, C.26, P.27, C.29 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.9, K:T.12, K:C.26, K:C.29

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.456, D.458, D.460 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.456, A:D.456, A:D.458, A:D.458, A:D.460

1 x F3S: FE3-S4 CLUSTER(Non-covalent)

F3S.4: 13 residues within 4Å: Chain D: C.183, P.184, E.185, V.187, F.188, C.203, T.204, L.205, C.206, E.207, E.208, C.209, I.219 2 PLIP interactions: 2 interactions with chain D, Metal complexes: D:C.203, D:C.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hirata, A. et al., The X-ray crystal structure of RNA polymerase from Archaea. Nature (2008)

Release Date

2008-02-12

Peptides

DNA-directed RNA polymerase subunit A: A
DNA-directed RNA polymerase subunit A": B
DNA-directed RNA polymerase subunit B: C
DNA-directed RNA polymerase subunit D: D
DNA-directed RNA polymerase subunit E: E
DNA-directed RNA polymerase subunit F: F
DNA-directed RNA polymerase subunit H: G
DNA-directed RNA polymerase subunit K: H
DNA-directed RNA polymerase subunit L: I
DNA-directed RNA polymerase subunit N: J
DNA-directed RNA polymerase subunit P: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
Q

B
G

C
R

D
S

E
T

F
U

G
V

H
W

I
X

J
Y

K
Z

DNA-directed RNA polymerase subunit A

DNA-directed RNA polymerase subunit A"

DNA-directed RNA polymerase subunit B

DNA-directed RNA polymerase subunit D

DNA-directed RNA polymerase subunit E

DNA-directed RNA polymerase subunit F

DNA-directed RNA polymerase subunit H

DNA-directed RNA polymerase subunit K

DNA-directed RNA polymerase subunit L

DNA-directed RNA polymerase subunit N

DNA-directed RNA polymerase subunit P

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