- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.69 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x CU1: COPPER (I) ION(Non-covalent)
- 3 x CU: COPPER (II) ION(Non-covalent)
CU.2: 4 residues within 4Å:- Chain A: H.97, H.132
- Chain B: H.303
- Ligands: N2O.4
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Metal complexes: A:H.97, A:H.132, B:H.303
CU.7: 4 residues within 4Å:- Chain B: H.97, H.132
- Chain C: H.303
- Ligands: N2O.11
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain C- Metal complexes: B:H.97, B:H.132, C:H.303
CU.13: 4 residues within 4Å:- Chain A: H.303
- Chain C: H.97, H.132
- Ligands: ACT.14
4 PLIP interactions:2 interactions with chain C, 1 interactions with chain A, 1 Ligand-Ligand interactions- Metal complexes: C:H.97, C:H.132, A:H.303, ACT.14
- 10 x ACT: ACETATE ION(Non-functional Binders)
ACT.3: 9 residues within 4Å:- Chain A: G.137, M.138, V.139, P.140, W.141, Y.200, V.204, M.207
- Chain B: E.310
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:P.140
- Hydrogen bonds: A:M.138, A:W.141, A:Y.200
ACT.8: 6 residues within 4Å:- Chain B: T.225, G.226, A.229, I.297, H.316, K.318
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:I.297
- Hydrogen bonds: B:G.226
- Water bridges: B:K.318
- Salt bridges: B:H.316, B:K.318
ACT.9: 4 residues within 4Å:- Chain B: D.170, G.235, E.236, K.237
2 PLIP interactions:2 interactions with chain B- Water bridges: B:K.237, B:K.237
ACT.10: 7 residues within 4Å:- Chain B: G.137, M.138, V.139, P.140, W.141, M.207
- Chain C: E.310
3 PLIP interactions:1 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:E.310, B:M.138, B:W.141
ACT.14: 10 residues within 4Å:- Chain A: H.252, I.254, H.303, L.305
- Chain C: D.95, H.97, H.132, A.134
- Ligands: CU.13, ACT.15
6 PLIP interactions:3 interactions with chain A, 3 interactions with chain C- Hydrophobic interactions: A:I.254, C:A.134
- Salt bridges: A:H.252, A:H.303, C:H.97, C:H.132
ACT.15: 5 residues within 4Å:- Chain A: A.299, F.309
- Chain C: P.136, V.139
- Ligands: ACT.14
No protein-ligand interaction detected (PLIP)ACT.16: 2 residues within 4Å:- Chain B: F.279
- Chain C: F.279
3 PLIP interactions:1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain A- Water bridges: C:F.279, A:F.279
- Hydrophobic interactions: B:F.279
ACT.17: 6 residues within 4Å:- Chain C: V.56, H.57, Y.181, V.182, P.183, T.203
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:T.203
- Hydrogen bonds: C:H.57
- Water bridges: C:V.144, C:T.203, C:T.203
ACT.18: 9 residues within 4Å:- Chain A: E.310
- Chain C: G.137, M.138, V.139, P.140, W.141, Y.200, V.204, M.207
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:M.138, C:W.141
ACT.19: 6 residues within 4Å:- Chain C: T.225, G.226, A.229, I.297, H.316, K.318
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:I.297
- Hydrogen bonds: C:G.226
- Salt bridges: C:H.316, C:K.318
- 2 x N2O: NITROUS OXIDE(Non-covalent)
- 1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tocheva, E.I. et al., Conserved active site residues limit inhibition of a copper-containing nitrite reductase by small molecules. Biochemistry (2008)
- Release Date
- 2008-04-01
- Peptides
- Copper-containing nitrite reductase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.69 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x CU1: COPPER (I) ION(Non-covalent)
- 3 x CU: COPPER (II) ION(Non-covalent)
- 10 x ACT: ACETATE ION(Non-functional Binders)
- 2 x N2O: NITROUS OXIDE(Non-covalent)
- 1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tocheva, E.I. et al., Conserved active site residues limit inhibition of a copper-containing nitrite reductase by small molecules. Biochemistry (2008)
- Release Date
- 2008-04-01
- Peptides
- Copper-containing nitrite reductase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C