SMTL ID : 2pu4.2 (1 other biounit)

AmpC beta-lacamase with bound covalent oxadiazole inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: F.38, T.39, W.40 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.39, A:T.39, A:T.39 Water bridges: A:H.10 SO4.2: 4 residues within 4Å: Chain A: G.113, A.138, W.139, L.146 No protein-ligand interaction detected (PLIP)

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 3 residues within 4Å: Chain A: W.90, L.158, K.161 2 PLIP interactions: 2 interactions with chain A pi-Cation interactions: A:W.90, A:W.90

1 x OX7: TERT-BUTYL [(1S)-2-METHYL-1-(1,3,4-OXADIAZOL-2-YL)PROPYL]CARBAMATE(Covalent)

OX7.4: 11 residues within 4Å: Chain A: S.61, K.64, Q.117, Y.147, N.149, Y.218, N.286, L.290, G.314, A.315, T.316 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.218, A:L.290, A:T.316 Hydrogen bonds: A:S.61, A:Q.117, A:N.149, A:A.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Babaoglu, K. et al., Comprehensive mechanistic analysis of hits from high-throughput and docking screens against beta-lactamase. J.Med.Chem. (2008)

Release Date

2008-04-15

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-lactamase

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