- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)
CPS.2: 11 residues within 4Å:- Chain A: K.377, E.380, D.386, E.389, L.390, L.393
- Chain D: K.377, E.380, L.390, L.393, L.394
12 PLIP interactions:4 interactions with chain D, 8 interactions with chain A- Hydrophobic interactions: D:L.390, D:L.393, D:L.394, A:K.377, A:E.380, A:D.386, A:E.389, A:L.390, A:L.390, A:L.393
- Hydrogen bonds: D:E.380, A:E.389
CPS.9: 11 residues within 4Å:- Chain B: K.377, E.380, L.390, L.393, L.394
- Chain C: K.377, E.380, D.386, E.389, L.390, L.393
12 PLIP interactions:4 interactions with chain B, 8 interactions with chain C- Hydrophobic interactions: B:L.390, B:L.393, B:L.394, C:K.377, C:E.380, C:D.386, C:E.389, C:L.390, C:L.390, C:L.393
- Hydrogen bonds: B:E.380, C:E.389
- 4 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)
ACP.3: 17 residues within 4Å:- Chain A: I.38, D.40, N.44, V.46, I.59, K.61, M.114, E.115, D.116, L.117, S.118, I.122, F.240, I.249, D.250, E.252
- Ligands: MG.1
13 PLIP interactions:13 interactions with chain A- Hydrogen bonds: A:D.40, A:N.44, A:N.44, A:K.61, A:E.115, A:L.117, A:D.250, A:E.252
- Water bridges: A:D.40, A:G.41
- Salt bridges: A:K.61
- pi-Stacking: A:F.240, A:F.240
ACP.7: 17 residues within 4Å:- Chain B: I.38, D.40, N.44, V.46, I.59, K.61, M.114, E.115, D.116, L.117, S.118, I.122, F.240, I.249, D.250, E.252
- Ligands: MG.5
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:N.44, B:K.61, B:E.115, B:D.116, B:L.117
- Salt bridges: B:K.61
- pi-Stacking: B:F.240, B:F.240
ACP.10: 17 residues within 4Å:- Chain C: I.38, D.40, N.44, V.46, I.59, K.61, M.114, E.115, D.116, L.117, S.118, I.122, F.240, I.249, D.250, E.252
- Ligands: MG.8
13 PLIP interactions:13 interactions with chain C- Hydrogen bonds: C:D.40, C:N.44, C:N.44, C:K.61, C:E.115, C:L.117, C:D.250, C:E.252
- Water bridges: C:D.40, C:G.41
- Salt bridges: C:K.61
- pi-Stacking: C:F.240, C:F.240
ACP.14: 17 residues within 4Å:- Chain D: I.38, D.40, N.44, V.46, I.59, K.61, M.114, E.115, D.116, L.117, S.118, I.122, F.240, I.249, D.250, E.252
- Ligands: MG.12
8 PLIP interactions:8 interactions with chain D- Hydrogen bonds: D:N.44, D:K.61, D:E.115, D:D.116, D:L.117
- Salt bridges: D:K.61
- pi-Stacking: D:F.240, D:F.240
- 4 x SR1: 5-S-methyl-5-thio-alpha-D-ribofuranose(Non-covalent)
SR1.4: 9 residues within 4Å:- Chain A: W.74, I.176, L.180, D.233, H.235, F.253, R.340, R.341, A.346
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:D.233, A:R.340, A:R.340, A:R.341
- Water bridges: A:D.233, A:S.238, A:Q.265
- Salt bridges: A:R.341
SR1.6: 7 residues within 4Å:- Chain B: I.176, D.233, H.235, F.253, R.340, R.341, A.346
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:D.233, B:R.340, B:R.340, B:R.341
- Water bridges: B:D.233, B:Q.265
- Salt bridges: B:R.341
SR1.11: 9 residues within 4Å:- Chain C: W.74, I.176, L.180, D.233, H.235, F.253, R.340, R.341, A.346
8 PLIP interactions:8 interactions with chain C- Hydrogen bonds: C:D.233, C:R.340, C:R.340, C:R.341
- Water bridges: C:D.233, C:S.238, C:Q.265
- Salt bridges: C:R.341
SR1.13: 7 residues within 4Å:- Chain D: I.176, D.233, H.235, F.253, R.340, R.341, A.346
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:D.233, D:R.340, D:R.340, D:R.341
- Water bridges: D:D.233, D:Q.265
- Salt bridges: D:R.341
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ku, S.-Y. et al., Structures of 5-methylthioribose kinase reveal substrate specificity and unusual mode of nucleotide binding. J.Biol.Chem. (2007)
- Release Date
- 2007-05-22
- Peptides
- Methylthioribose kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)
- 4 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)
- 4 x SR1: 5-S-methyl-5-thio-alpha-D-ribofuranose(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ku, S.-Y. et al., Structures of 5-methylthioribose kinase reveal substrate specificity and unusual mode of nucleotide binding. J.Biol.Chem. (2007)
- Release Date
- 2007-05-22
- Peptides
- Methylthioribose kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B