- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.3: 17 residues within 4Å:- Chain A: I.38, D.40, N.44, V.46, I.59, K.61, M.114, E.115, D.116, L.117, S.118, F.240, I.249, D.250, E.252
- Ligands: MG.1, MG.2
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.44, A:E.115, A:L.117
- Salt bridges: A:K.61, A:K.61
- pi-Stacking: A:F.240
ADP.8: 19 residues within 4Å:- Chain B: I.38, D.40, N.44, V.46, I.59, K.61, M.114, E.115, D.116, L.117, S.118, I.122, F.240, I.249, D.250, E.252
- Ligands: MG.4, MG.5, PO4.6
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:N.44, B:E.115, B:D.116, B:L.117, B:S.118
- Salt bridges: B:K.61, B:K.61
- pi-Stacking: B:F.240
ADP.11: 17 residues within 4Å:- Chain C: I.38, D.40, N.44, V.46, I.59, K.61, M.114, E.115, D.116, L.117, S.118, F.240, I.249, D.250, E.252
- Ligands: MG.9, MG.10
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:N.44, C:E.115, C:L.117
- Salt bridges: C:K.61, C:K.61
- pi-Stacking: C:F.240
ADP.16: 19 residues within 4Å:- Chain D: I.38, D.40, N.44, V.46, I.59, K.61, M.114, E.115, D.116, L.117, S.118, I.122, F.240, I.249, D.250, E.252
- Ligands: MG.12, MG.13, PO4.14
10 PLIP interactions:10 interactions with chain D- Hydrogen bonds: D:N.44, D:E.115, D:D.116, D:L.117, D:S.118, D:D.250, D:E.252
- Salt bridges: D:K.61, D:K.61
- pi-Stacking: D:F.240
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.6: 6 residues within 4Å:- Chain B: D.233, H.235, D.250
- Ligands: MG.4, MG.5, ADP.8
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.233
- Salt bridges: B:H.235
PO4.14: 6 residues within 4Å:- Chain D: D.233, H.235, D.250
- Ligands: MG.12, MG.13, ADP.16
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:D.233
- Salt bridges: D:H.235
- 2 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)
CPS.7: 10 residues within 4Å:- Chain A: K.377, E.380, D.386, E.389, L.390, L.393
- Chain D: K.377, E.380, L.390, L.394
10 PLIP interactions:6 interactions with chain A, 4 interactions with chain D- Hydrophobic interactions: A:K.377, A:E.380, A:D.386, A:L.390, A:L.390, A:L.393, D:L.390, D:L.394
- Hydrogen bonds: D:E.380
- Water bridges: D:K.377
CPS.15: 10 residues within 4Å:- Chain B: K.377, E.380, L.390, L.394
- Chain C: K.377, E.380, D.386, E.389, L.390, L.393
10 PLIP interactions:6 interactions with chain C, 4 interactions with chain B- Hydrophobic interactions: C:K.377, C:E.380, C:D.386, C:L.390, C:L.390, C:L.393, B:L.390, B:L.394
- Hydrogen bonds: B:E.380
- Water bridges: B:K.377
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ku, S.-Y. et al., Structures of 5-methylthioribose kinase reveal substrate specificity and unusual mode of nucleotide binding. J.Biol.Chem. (2007)
- Release Date
- 2007-05-22
- Peptides
- Methylthioribose kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ku, S.-Y. et al., Structures of 5-methylthioribose kinase reveal substrate specificity and unusual mode of nucleotide binding. J.Biol.Chem. (2007)
- Release Date
- 2007-05-22
- Peptides
- Methylthioribose kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B