SMTL ID : 2q9z.1

Trichodiene synthase: Complex with inorganic pyrophosphate resulting from the reaction with 2-fluorofarnesyl diphosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

homo-dimer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: Y.113, W.128, N.132, F.135, I.151, L.155 Chain B: F.114, L.117 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.132, A:L.155 EDO.6: 6 residues within 4Å: Chain A: F.114 Chain B: Y.113, W.128, N.132, F.135, I.151 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.113, B:Y.113, B:N.132, B:I.151

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain B: R.182, N.225, D.226, S.229, E.233 Ligands: POP.5 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Ligand interactions Metal complexes: B:S.229, B:E.233, B:E.233, POP.5 MG.3: 4 residues within 4Å: Chain B: D.100, D.239 Ligands: MG.4, POP.5 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.100, B:D.239 MG.4: 5 residues within 4Å: Chain B: D.100, E.164, N.185 Ligands: MG.3, POP.5 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.100

1 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.5: 10 residues within 4Å: Chain B: D.100, R.182, N.225, K.232, E.233, R.304, Y.305 Ligands: MG.2, MG.3, MG.4 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:D.100, B:N.225, B:N.225, B:S.229, B:Y.305 Salt bridges: B:R.182, B:K.232, B:R.304

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vedula, L.S. et al., Exploring biosynthetic diversity with trichodiene synthase. Arch.Biochem.Biophys. (2007)

Release Date

2007-10-30

Peptides

Trichodiene synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Trichodiene synthase

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