SMTL ID : 2qcx.1

Crystal structure of Bacillus subtilis TenA Y112F mutant complexed with formyl aminomethyl pyrimidine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x PF1: N-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-N-(2-HYDROXYETHYL)FORMAMIDE(Non-covalent)

PF1.1: 11 residues within 4Å: Chain A: D.71, Y.74, L.75, F.78, C.162, Y.163, Y.166, Y.190, F.195, E.232, F.235 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.74, A:F.235 Hydrogen bonds: A:D.71, A:Y.190 Water bridges: A:D.71 pi-Stacking: A:Y.166 PF1.2: 11 residues within 4Å: Chain B: D.71, Y.74, L.75, F.78, C.162, Y.163, Y.166, Y.190, F.195, E.232, F.235 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:Y.74, B:F.235 Hydrogen bonds: B:D.71, B:Y.190 Water bridges: B:T.105 pi-Stacking: B:Y.166 PF1.3: 11 residues within 4Å: Chain C: D.71, Y.74, L.75, F.78, C.162, Y.163, Y.166, Y.190, F.195, E.232, F.235 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:Y.74, C:F.235 Hydrogen bonds: C:D.71 Water bridges: C:Y.190 pi-Stacking: C:Y.166 PF1.4: 11 residues within 4Å: Chain D: D.71, Y.74, L.75, F.78, C.162, Y.163, Y.166, Y.190, F.195, E.232, F.235 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:Y.74, D:F.235 Hydrogen bonds: D:D.71 pi-Stacking: D:Y.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jenkins, A.L. et al., Mutagenesis studies on TenA: A thiamin salvage enzyme from Bacillus subtilis. Bioorg.Chem. (2008)

Release Date

2007-10-23

Peptides

Transcriptional activator tenA: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transcriptional activator tenA