SMTL ID : 2qd6.1

HIV-1 Protease Mutant I50V with potent Antiviral inhibitor GRL-98065

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.28 Å

Oligo State

homo-dimer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 1 residues within 4Å: Chain A: D.60 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.60, A:D.60 Water bridges: A:R.41

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: G.73, T.74, N.88 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain B: W.6 Ligand excluded by PLIP

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 5 residues within 4Å: Chain B: P.39, G.40, R.41, Y.59, D.60 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:D.60 Hydrogen bonds: B:D.60 ACT.5: 2 residues within 4Å: Chain A: W.6 Chain B: T.91 1 PLIP interactions: 1 interactions with chain A Water bridges: A:W.6

1 x 065: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(2S,3R)-3-HYDROXY-4-(N-ISOBUTYLBENZO[D][1,3]DIOXOLE-5-SULFONAMIDO)-1-PHENYLBUTAN-2-YLCARBAMATE(Non-covalent)

065.6: 22 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, P.81, V.82, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, G.48, G.49, V.50, V.82 18 PLIP interactions: 8 interactions with chain B, 10 interactions with chain A Hydrophobic interactions: B:L.23, B:V.82, A:A.28, A:V.32, A:P.81, A:V.82, A:I.84 Hydrogen bonds: B:D.25, B:G.27, B:D.29, B:D.30, A:D.29, A:D.30 Water bridges: B:V.50, A:G.48, A:V.50 Salt bridges: B:D.25, A:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y.F. et al., Potent new antiviral compound shows similar inhibition and structural interactions with drug resistant mutants and wild type HIV-1 protease. J.Med.Chem. (2007)

Release Date

2008-04-22

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

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