SMTL ID : 2qe8.1 (1 other biounit)

Crystal structure of a putative hydrolase (ava_4197) from anabaena variabilis atcc 29413 at 1.35 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

homo-dimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: E.207, W.208, R.221 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.208 Water bridges: A:R.221, A:R.221, A:R.279 Salt bridges: A:R.221 SO4.9: 4 residues within 4Å: Chain B: Q.185, D.187, T.189, I.191 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.185, B:D.187 Water bridges: B:D.187 SO4.10: 3 residues within 4Å: Chain B: E.207, W.208, R.221 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.207 Water bridges: B:R.221 Salt bridges: B:R.221

2 x UNL: UNKNOWN LIGAND(Non-functional Binders)

UNL.2: 18 residues within 4Å: Chain A: N.21, H.35, F.37, L.70, F.121, N.123, D.124, L.195, N.198, G.199, M.214, D.251, G.252, W.292, D.294, L.311, L.317 Ligands: GOL.4 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:N.21, A:N.21, A:H.35, A:N.123, A:D.124, A:N.198, A:D.251, A:D.251, A:D.251 Water bridges: A:G.252, A:G.252, A:I.253 UNL.11: 16 residues within 4Å: Chain B: H.35, F.37, L.70, N.123, D.124, P.193, L.195, N.198, G.199, M.214, D.251, G.252, D.294, L.311, L.317 Ligands: GOL.13 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:N.123, B:D.124, B:N.198, B:N.198, B:N.198, B:D.251, B:D.251, B:D.251, B:D.251 Water bridges: B:N.21, B:N.21, B:N.21, B:G.252, B:G.252, B:I.253

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 6 residues within 4Å: Chain A: D.27, G.28, L.47, S.300, D.301, Y.305 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.47 Water bridges: A:S.300, A:D.301 PG4.12: 6 residues within 4Å: Chain B: L.24, G.28, L.47, S.300, D.301, Y.305 1 PLIP interactions: 1 interactions with chain B Water bridges: B:Y.305

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: F.37, Q.88, F.121, I.183, L.195 Ligands: UNL.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.88 Water bridges: A:Q.88 GOL.5: 6 residues within 4Å: Chain A: V.12, A.13, E.14, L.15, L.47, G.51 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.12, A:E.14, A:E.14 Water bridges: A:S.16 GOL.6: 5 residues within 4Å: Chain A: M.42, Q.43, V.44, F.55, F.66 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.43, A:Q.43, A:V.44, A:F.55 Water bridges: A:Q.58 GOL.7: 5 residues within 4Å: Chain A: I.79, W.81, A.97, S.106, R.107 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.132 GOL.8: 5 residues within 4Å: Chain A: R.159, V.160, L.161, Q.162, D.234 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.160, A:Q.162 Water bridges: A:R.159, A:R.159, A:Q.162 GOL.13: 7 residues within 4Å: Chain B: F.37, Q.88, F.121, I.183, L.195, L.317 Ligands: UNL.11 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.88, B:Q.88 GOL.14: 5 residues within 4Å: Chain B: I.79, W.81, A.97, S.106, R.107 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.106, B:S.106, B:R.107 GOL.15: 4 residues within 4Å: Chain B: Q.162, G.163, Y.164, P.165 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.162 GOL.16: 4 residues within 4Å: Chain B: P.165, Y.220, I.241, R.243 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.243 Water bridges: B:P.165, B:G.238, B:G.238 GOL.17: 5 residues within 4Å: Chain B: M.42, Q.43, V.44, F.55, F.66 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.43, B:Q.43, B:V.44, B:V.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of uncharacterized protein Ava_4197 (YP_324691.1) from Anabaena variabilis ATCC 29413 at 1.35 A resolution. To be published

Release Date

2007-07-10

Peptides

Uncharacterized protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized protein

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