SMTL ID : 2qlw.1 (1 other biounit)

Crystal structure of rhamnose mutarotase RhaU of Rhizobium leguminosarum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: A.121, M.124 6 PLIP interactions: 5 Ligand-Water interactions, 1 interactions with chain A Metal complexes: H2O.1, H2O.1, H2O.2, H2O.2, H2O.3, A:M.124 MG.11: 3 residues within 4Å: Chain B: A.121, M.124, T.126 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:A.121, B:M.124, B:T.126, H2O.7, H2O.8, H2O.8

16 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 3 residues within 4Å: Chain A: Q.49, A.125 Ligands: FMT.10 Ligand excluded by PLIP FMT.3: 3 residues within 4Å: Chain A: A.118, A.121, N.130 Ligand excluded by PLIP FMT.4: 3 residues within 4Å: Chain A: M.54, D.122, I.123 Ligand excluded by PLIP FMT.5: 2 residues within 4Å: Chain A: P.52, N.90 Ligand excluded by PLIP FMT.6: 3 residues within 4Å: Chain A: E.55, A.56, R.59 Ligand excluded by PLIP FMT.7: 6 residues within 4Å: Chain A: L.41, E.42, K.43, T.97, H.142 Ligands: FMT.8 Ligand excluded by PLIP FMT.8: 5 residues within 4Å: Chain A: E.42, K.43, T.139 Ligands: FMT.7, FMT.9 Ligand excluded by PLIP FMT.9: 6 residues within 4Å: Chain A: T.139, L.140, F.141, H.142 Chain B: R.59 Ligands: FMT.8 Ligand excluded by PLIP FMT.10: 3 residues within 4Å: Chain A: N.51, P.52 Ligands: FMT.2 Ligand excluded by PLIP FMT.12: 3 residues within 4Å: Chain B: E.64, W.66, H.119 Ligand excluded by PLIP FMT.13: 5 residues within 4Å: Chain B: K.47, M.48, V.133, Q.134, S.135 Ligand excluded by PLIP FMT.14: 3 residues within 4Å: Chain B: E.55, A.56, R.59 Ligand excluded by PLIP FMT.15: 1 residues within 4Å: Chain B: W.66 Ligand excluded by PLIP FMT.16: 3 residues within 4Å: Chain B: K.47, T.89, T.91 Ligand excluded by PLIP FMT.17: 2 residues within 4Å: Chain B: T.40, L.41 Ligand excluded by PLIP FMT.18: 2 residues within 4Å: Chain B: N.51, P.52 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Richardson, J.S. et al., RhaU of Rhizobium leguminosarum is a rhamnose mutarotase. J.Bacteriol. (2008)

Release Date

2008-11-04

Peptides

RhaU: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RhaU

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