SMTL ID : 2qm1.2 (1 other biounit)

Crystal structure of glucokinase from Enterococcus faecalis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.169, C.179, C.181, C.186 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.169, A:C.179, A:C.181, A:C.186 ZN.6: 4 residues within 4Å: Chain B: H.169, C.179, C.181, C.186 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.169, B:C.179, B:C.181, B:C.186

3 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.3: 4 residues within 4Å: Chain A: N.116, A.118, N.119, G.148 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.148, H2O.5, H2O.6 MG.7: 5 residues within 4Å: Chain B: N.116, A.118, N.119, G.148, A.164 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:G.148, H2O.12, H2O.13

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: M.241, D.244, R.245 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.245 GOL.5: 2 residues within 4Å: Chain A: K.155, L.156 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.155, A:L.156 Water bridges: A:K.155, A:L.156, A:H.158

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 2 residues within 4Å: Chain B: G.235, H.237 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.235 Water bridges: B:H.237, B:H.237 Salt bridges: B:H.237 SO4.9: 2 residues within 4Å: Chain B: Q.288, R.296 2 PLIP interactions: 2 interactions with chain B Water bridges: B:Q.288, B:R.296

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.10: 4 residues within 4Å: Chain B: D.244, R.245, F.248, Y.249 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.173, B:D.244 Water bridges: B:R.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Glucokinase from Enterococcus faecalis. To be Published

Release Date

2007-07-31

Peptides

Glucokinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Glucokinase

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